SCT ON FEDORA/CENTOS/RHEL

Ants & c3d

Binaries for debian work well, just make sure the paths are set in the bashrc as follow:

PATH=${PATH}:${SCT_DIR}/install/debian/ants

PATH=${PATH}:${SCT_DIR}/install/debian/c3d

FSL

Need libmng installed for fslview:

~ sudo yum install libmng libpng12

Then install FSL with the python script fslinstaller.py you'll find there : http://goo.gl/Tfu1UW Make sure the installer set your bash configuration, following lines should be in your bashrc or bash_profile. If not, add it:

FSLDIR="/usr/local/fsl"
. ${FSLDIR}/etc/fslconf/fsl.sh
PATH=${FSLDIR}/bin:${PATH}
export FSLDIR PATH

Miniconda & requirements

Run the miniconda installer shell script for linux you can get there http://conda.pydata.org/miniconda.html

~ bash Miniconda-*.sh

Then, in the SCT repo, type:

~ bash ./requirements/requirements.sh