🖥 Software
Below is a list of software projects created at NeuroPoly or at collaborative institutions. These projects are open source and freely available.
Name | Description | Language | Links |
Atlas Rat | Scripts to generate a microstructure atlas of the rat spinal cord | MATLAB | |
AxonSeg | Automatic segmentation of axon and myelin from microscopy data | MATLAB | |
AxonDeepSeg | Segmentation software for microscopy data using deep learning | Python | |
AxonPacking | Simulation software for arrangements of axons in white matter | MATLAB | |
Tract Clustering | Data-driven approach for tracts in rat histology | Python |
Name | Description | Language | Links |
ivadomed | Comprehensive and open-source repository of deep learning methods for medical data segmentation | Python | |
Multiclass Segmentation | Code related to the NIH marmoset longitudinal segmentation project | Python | |
qMRLab | Software for data aimulation, analysis, and visualization of qMRI data (Magnetization Transfer, Diffusion, etc.) | MATLAB | |
Shimming Toolbox | Code for performing real-time shimming using external MRI shim coils | MATLAB Python | |
Spinal Cord Toolbox | Comprehensive and open-source library of analysis tools for multi-parametric MRI of the spinal cord | Python | |
Template | A framework for creating unbiased MRI templates of the spinal cord | Python |
NeuroPoly welcomes and appreciates contributions. To get started, please check out NeuroPoly's contributing guidelines: NeuroPoly Lab: Software Contributing Guidlines.
