Below is a list of software projects created at NeuroPoly or at collaborative institutions. These projects are open source and freely available.
Scripts to generate a microstructure atlas of the rat spinal cord
Automatic segmentation of axon and myelin from microscopy data
Segmentation software for microscopy data using deep learning
Simulation software for arrangements of axons in white matter
Data-driven approach for tracts in rat histology
Comprehensive and open-source repository of deep learning methods for medical data segmentation
Code related to the NIH marmoset longitudinal segmentation project
Software for data aimulation, analysis, and visualization of qMRI data (Magnetization Transfer, Diffusion, etc.)
Code for performing real-time shimming using external MRI shim coils
Spinal Cord Toolbox
Comprehensive and open-source library of analysis tools for multi-parametric MRI of the spinal cord
A framework for creating unbiased MRI templates of the spinal cord
NeuroPoly welcomes and appreciates contributions. To get started, please check out NeuroPoly's contributing guidelines: NeuroPoly Lab: Software Contributing Guidlines.