List of publications on Google Scholar and Pubmed


Journal articles

  1. Perone CS, Cohen-Adad J. Promises and limitations of deep learning for medical image segmentation Journal of Medical Artificial Intelligence 2019;2.
  2. Querin G, El Mendili MM, Lenglet T, Behin A, Stojkovic T, Salachas F, Devos D, Le Forestier N, Del Mar Amador M, Debs R, Lacomblez L, Meninger V, Bruneteau G, Cohen-Adad J, Lehéricy S, Laforêt P, Blancho S, Benali H, Catala M, Li M, Marchand-Pauvert V, Hogrel JY, Bede P, Pradat PF. The spinal and cerebral profile of adult spinal-muscular atrophy: A multimodal imaging study Neuroimage Clin 2018 Nov 28.
  3. Badji, A, Noriega de la Colina A, Karakuzu A, Duval T, Desjardins-Crepeau L, Joubert S, Bherer L, Lamarre-Cliche M, Stikov N, Girouard H, Cohen-Adad j. Arterial stiffness and white matter integrity in the elderly : A diffusion tensor and magnetization transfer imaging study Neuroimage 2019 Feb 1;186:577-585.
  4. Perone CS, Cohen-Adad J. Deep Semi-supervised Segmentation with Weight-Averaged Consistency Targets Deep Learning in Medical Image Analysis and Multimodal Learning for Clinical Decision Support; 2018; Cham Springer International Publishing p 12-19.
  5. Lee L, Ljungberg E, Shin D, Figley C, Vavasour I, Rauscher A, Cohen-Adad J, Li D, Traboulsee A, MacKay A, Lee J, Kolind S. Inter-vendor reproducibility of myelin water imaging using a 3D gradient and spin echo sequence Front Neurosci 2018;12:854.
  6. Eden D, Gros C, Badji A, Dupont SM, De Leener B, Maranzano J, Zhuoquiong R, Liu Y, Granberg T, Ouellette R, Stawiarz L, Hillert J, Talbott J, Bannier E, Kerbrat A*, Edan G, Labauge P, Callot V, Pelletier J, Audoin B, Rasoanandrianina H, Brisset JC, Valsasina P, Rocca MA, Filippi M, Bakshi R, Tauhid S, Prados F, Yiannakas M, Kearney H, Ciccarelli O, Smith S, Treaba CA, Mainero C, Lefeuvre J, Reich DS, Nair G, Shepherd T, Charlson E, Tachibana Y, Hori M, Kamiya K, Chougar L, Narayanan S, Cohen-Adad J. Spatial distribution of multiple sclerosis lesions in the cervical spinal cord Brain 2019 Jan 30 doi: 10.1093/brain/awy352
  7. Duval T, Saliani A, Nami H, Nanci A, Stikov N, Leblond H, Cohen-Adad J. Axons morphometry in the human spinal cord Neuroimage 2018 Oct 13 pii: S1053-8119(18)32004-4.
  8. Gros C, De Leener B, Badji A, Maranzano J, Eden D, Dupont SM, Talbott J, Zhuoquiong R, Liu Y, Granberg T, Ouellette R, Tachibana Y, Hori M, Kamiya K, Chougar L, Stawiarz L, Hillert J, Bannier E, Kerbrat A, Edan G, Labauge P, Callot V, Pelletier J, Audoin B, Rasoanandrianina H, Brisset JC, Valsasina P, Rocca MA, Filippi M, Bakshi R, Tauhid S, Prados F, Yiannakas M, Kearney H, Ciccarelli O, Smith S, Treaba CA, Mainero C, Lefeuvre J, Reich DS, Nair G, Auclair V, McLaren DG, Martin AR, Fehlings MG, Vahdat S, Khatibi A, Doyon J, Shepherd T, Charlson E, Narayanan S, Cohen-Adad J. Automatic segmentation of the spinal cord and intramedullary multiple sclerosis lesions with convolutional neural networks Neuroimage 2018 Oct 6;184:901-915. 
  9. Hagiwara A, Hori M, Cohen-Adad J, Nakazawa M, Suzuki Y, Kasahara A, Horita M, Haruyama T, Andica C, Maekawa T, Kamagata K, Kumamaru KK, Abe O, Aoki S. Linearity, Bias, Intrascanner Repeatability, and Interscanner Reproducibility of Quantitative Multidynamic Multiecho Sequence for Rapid Simultaneous Relaxometry at 3 T: A Validation Study With a Standardized Phantom and Healthy Controls Invest Radiol 2018 Sep 5 doi: 10.1097/RLI.0000000000000510.
  10. Cadotte DW, Akbar MA, Fehlings MG, Stroman PW, Cohen-Adad J. What Has Been Learned from Magnetic Resonance Imaging Examination of the Injured Human Spinal Cord: A Canadian Perspective J Neurotrauma 2018 Aug 15;35(16):1942-1957.
  11. Lopez Rios N, Foias A, Lodygensky G, Dehaes M, Cohen-Adad J. Size-adaptable 13-channel receive array for brain MRI in human neonates at 3 T NMR Biomed 2018 Aug;31(8):e3944.
  12. Calabrese E, Adil SM, Cofer G, Perone CS, Cohen-Adad J, Lad SP, Johnson GA. Postmortem diffusion MRI of the entire human spinal cord at microscopic resolution Neuroimage Clin 2018 Mar 27;18:963-971.
  13. Martin AR, De Leener B, Cohen-Adad J, Kalsi-Ryan S, Cadotte DW, Wilson JR, Tetreault L, Nouri A, Crawley A, Mikulis DJ, Ginsberg H, Massicotte EM, Fehlings MG. Monitoring for myelopathic progression with multiparametric quantitative MRI PLoS ONE 2018;13(4):e0195733.
  14. Perone CS, Calabrese E, Cohen-Adad J. Spinal cord gray matter segmentation using deep dilated convolutions Sci Rep 2018;8(1):5966.
  15. Martin AR, De Leener B, Cohen-Adad J, Cadotte DW, Nouri A, Wilson JR, Tetreault L, Crawley AP, Mikulis DJ, Ginsberg H, Fehlings MG. Can microstructural MRI detect subclinical tissue injury in subjects with asymptomatic cervical spinal cord compression? A prospective cohort study BMJ Open 2018;8(4):e019809.
  16. Cohen-Adad J. Microstructural imaging in the spinal cord and validation strategies Neuroimage 2018 Apr 7 pii: S1053-8119(18)30297-0
  17. Morozov D, Lopez Rios N, Duval T, Foias A, Cohen-Adad J. Effect of cardiac-related translational motion in diffusion MRI of the spinal cord Magn Reson Imaging 2018;50:119-124.
  18. Zaimi A, Wabartha M, Herman V, Antonsanti P-L, Perone CS, Cohen-Adad J. AxonDeepSeg: automatic axon and myelin segmentation from microscopy data using convolutional neural networks Scientific Reports 2018;8(1).
  19. Mangeat G, Badji A, Ouellette R, Treaba CA, Herranz E, Granberg T, Louapre C, Stikov N, Sloane JA, Bellec P, Mainero C, Cohen-Adad J. Changes in structural network are associated with cortical demyelination in early multiple sclerosis Hum Brain Mapp 2018;39(5):2133-2146.
  20. Albrecht DS, Ahmed SU, Kettner NW, Borra RJH, Cohen-Adad J, Deng H, Houle TT, Opalacz A, Roth SA, Melo MFV, Chen L, Mao J, Hooker JM, Loggia ML, Zhang Y. Neuroinflammation of the spinal cord and nerve roots in chronic radicular pain patients Pain 2018;159(5):968-977.
  21. Topfer R, Foias A, Stikov N, Cohen-Adad J. Real-time correction of respiration-induced distortions in the human spinal cord using a 24-channel shim array Magn Reson Med 2018 Sep;80(3):935-946 doi: 10.1002/mrm.27089
  22. Lopez Rios N, Pouliot P, Papoutsis K, Foias A, Stikov N, Lesage F, Dehaes M, Cohen-Adad J. Design and construction of an optimized transmit/receive hybrid birdcage resonator to improve full body images of medium-sized animals in 7T scanner PLoS ONE 2018;13(2):e0192035.
  23. Saliani A, Perraud B, Duval T, Stikov N, Rossignol S, Cohen-Adad J. Axon and Myelin Morphology in Animal and Human Spinal Cord Front Neuroanat 2017;11:129.
  24. Levy S, Guertin MC, Khatibi A, Mezer A, Martinu K, Chen JI, Stikov N, Rainville P, Cohen-Adad J. Test-retest reliability of myelin imaging in the human spinal cord: Measurement errors versus region- and aging-induced variations PLoS ONE 2018;13(1):e0189944.
  25. Gros C, De Leener B, Dupont SM, Martin AR, Fehlings MG, Bakshi R, Tummala S, Auclair V, McLaren DG, Callot V, Cohen-Adad J, Sdika M. Automatic spinal cord localization, robust to MRI contrasts using global curve optimization Med Image Anal 2018;44:215-227.
  26. Duval T, Smith V, Stikov N, Klawiter EC, Cohen-Adad J. Scan-rescan of axcaliber, macromolecular tissue volume, and g-ratio in the spinal cord Magn Reson Med 2018;79(5):2759-2765.
  27. Paquin ME, El Mendili MM, Gros C, Dupont SM, Cohen-Adad J, Pradat PF. Spinal Cord Gray Matter Atrophy in Amyotrophic Lateral Sclerosis AJNR Am J Neuroradiol 2018;39(1):184-192.
  28. Mingasson T, Duval T, Stikov N, Cohen-Adad J. AxonPacking: An Open-Source Software to Simulate Arrangements of Axons in White Matter Front Neuroinform 2017 Jan 31;11:5 doi: 10.3389/fninf.2017.00005
  29. De Leener B, Fonov VS, Collins DL, Callot V, Stikov N, Cohen-Adad J. PAM50: Unbiased multimodal template of the brainstem and spinal cord aligned with the ICBM152 space Neuroimage 2017;165:170-179.
  30. Granberg T, Fan Q, Treaba CA, Ouellette R, Herranz E, Mangeat G, Louapre C, Cohen-Adad J, Klawiter EC, Sloane JA, Mainero C. In vivo characterization of cortical and white matter neuroaxonal pathology in early multiple sclerosis Brain 2017;140(11):2912-2926.
  31. Campbell JSW, Leppert IR, Narayanan S, Boudreau M, Duval T, Cohen-Adad J, Pike GB, Stikov N. Promise and pitfalls of g-ratio estimation with MRI Neuroimage 2017 doi: 10.1016/j.neuroimage.2017.08.038
  32. Khoshnejad M, Roy M, Martinu K, Chen JI, Cohen-Adad J, Grondin S, Rainville P. Brain processing of the temporal dimension of acute pain in short-term memory Pain 2017 doi: 10.1097/j.pain.0000000000001003
  33. Martin AR, De Leener B, Cohen-Adad J, Cadotte DW, Kalsi-Ryan S, Lange SF, Tetreault L, Nouri A, Crawley A, Mikulis DJ, Ginsberg H, Fehlings MG. A Novel MRI Biomarker of Spinal Cord White Matter Injury: T2*-Weighted White Matter to Gray Matter Signal Intensity Ratio AJNR Am J Neuroradiol 2017;38(6):1266-1273.
  34. Martin AR, De Leener B, Cohen-Adad J, Cadotte DW, Kalsi-Ryan S, Lange SF, Tetreault L, Nouri A, Crawley A, Mikulis DJ, Ginsberg H, Fehlings MG. Clinically Feasible Microstructural MRI to Quantify Cervical Spinal Cord Tissue Injury Using DTI, MT, and T2*-Weighted Imaging: Assessment of Normative Data and Reliability AJNR Am J Neuroradiol 2017;38(6):1257-1265.
  35. De Tillieux P, Topfer R, Foias A, Leroux I, El Maachi I, Leblond H, Stikov N, Cohen-Adad J. A pneumatic phantom for mimicking respiration-induced artifacts in spinal MRI Magn Reson Med 2017 doi:10.1002/mrm.26679
  36. De Leener B, Mangeat G, Dupont S, Martin AR, Callot V, Stikov N, Fehlings MG, Cohen-Adad J. Topologically-preserving straightening of spinal cord MRI J Magn Reson Imaging 2017 Oct;46(4):1209-1219
  37. McCoy DB, Talbott JF, Wilson M, Mamlouk M, Cohen-Adad J, Wilson M, Narvid J. MRI Atlas-Based Measurement of Spinal Cord Injury Predicts Outcome in Acute Flaccid Myelitis AJNR Am J Neuroradiol 2017 Feb;38(2):410-417 doi: 10.3174/ajnr.A5044
  38. De Leener B, Lévy S, Dupont SM, Fonov VS, Stikov N, Louis Collins D, Callot V, Cohen-Adad J. SCT: Spinal Cord Toolbox, an open-source software for processing spinal cord MRI data Neuroimage 2017 Jan 15;145(Pt A):24-43.
  39. Duval T, Lévy S, Stikov N, Campbell J, Mezer A, Witzel T, Keil B, Smith V, Wald LL, Klawiter E, Cohen-Adad J. g-Ratio weighted imaging of the human spinal cord in vivo Neuroimage 2017;145(Pt A):11-23.
  40. Dupont SM, De Leener B, Taso M, Le Troter A, Nadeau S, Stikov N, Callot V, Cohen-Adad J. Fully-integrated framework for the segmentation and registration of the spinal cord white and gray matter Neuroimage 2017;150:358-372.
  41. Duval T, Stikov N, Cohen-Adad J. Modeling white matter microstructure Funct Neurol 2016 Oct/Dec;31(4):217-228.
  42. Zaimi A, Duval T, Gasecka A, Côté D, Stikov N, Cohen-Adad J. AxonSeg: open source software for axon and myelin segmentation and morphometric analysis Front Neuroinform 2016;10(37).
  43. Topfer R, Starewicz P, Lo KM, Metzemaekers K, Jette D, Hetherington HP, Stikov N, Cohen-Adad J. A 24-channel shim array for the human spinal cord: Design, evaluation, and application Magn Reson Med 2016.
  44. Cabana J-F, Gu Y, Boudreau M, Levesque IR, Atchia Y, Sled JG, Narayanan S, Arnold DL, Pike GB, Cohen-Adad J, Duval T, Vuong M-T, Stikov N. Quantitative magnetization transfer imaging made easy with qMTLab: Software for data simulation, analysis, and visualization Concepts in Magnetic Resonance Part A 2015;44A(5):263-277.
  45. Craddock CR, S Margulies D, Bellec P, Nolan Nichols B, Alcauter S, A Barrios F, Burnod Y, J Cannistraci C, Cohen-Adad J, De Leener B, Dery S, Downar J, Dunlop K, R Franco A, Seligman Froehlich C, J Gerber A, S Ghosh S, J Grabowski T, Hill S, Sólon Heinsfeld A, Matthew Hutchison R, Kundu P, R Laird A, Liew SL, J Lurie D, G McLaren D, Meneguzzi F, Mennes M, Mesmoudi S, O'Connor D, H Pasaye E, Peltier S, Poline JB, Prasad G, Fraga Pereira R, Quirion PO, Rokem A, S Saad Z, Shi Y, C Strother S, Toro R, Q Uddin L, D Van Horn J, W Van Meter J, C Welsh R, Xu T. Brainhack: a collaborative workshop for the open neuroscience community Gigascience 2016;5:16.
  46. Samson RS, Levy S, Schneider T, Smith AK, Smith SA, Cohen-Adad J, Gandini Wheeler-Kingshott CA. ZOOM or Non-ZOOM? Assessing Spinal Cord Diffusion Tensor Imaging Protocols for Multi-Centre Studies PLoS ONE 2016;11(5):e0155557.
  47. De Leener B, Taso M, Cohen-Adad J, Callot V. Segmentation of the human spinal cord MAGMA 2016 Apr;29(2):125-53 doi: 10.1007/s10334-015-0507-2
  48. Martin AR, Aleksanderek I, Cohen-Adad J, Tarmohamed Z, Tetreault L, Smith N, Cadotte DW, Crawley AP, Ginsberg H, Mikulis D, Fehlings MG. Translating state-of-the-art spinal cord MRI techniques to clinical use: A systematic review of clinical studies utilizing DTI, MT, MWF, MRS, and fMRI Neuroimage Clin 2015 Dec 4;10:192-238 doi: 10.1016/j.nicl.2015.11.019
  49. Yiannakas MC, Mustafa A, De Leener B, Kearney H, Tur C, Altmann DR, De Angelis F, Plantone D, Ciccarelli O, Miller DH, Cohen-Adad J, Wheeler-Kingshott C. Fully automated segmentation of the cervical cord from T1-weighted MRI using PropSeg: Application to multiple sclerosis Neuroimage Clin 2015 Nov 10;10:71-7.
  50. Cadotte A, Cadotte DW, Livne M, Cohen-Adad J, Fleet D, Mikulis D, Fehlings MG. Spinal Cord Segmentation by One Dimensional Normalized Template Matching: A Novel, Quantitative Technique to Analyze Advanced Magnetic Resonance Imaging Data PLoS ONE 2015;10(10):e0139323.
  51. Stikov N, Campbell JS, Stroh T, Lavelee M, Frey S, Novek J, Nuara S, Ho MK, Bedell BJ, Dougherty RF, Leppert IR, Boudreau M, Narayanan S, Duval T, Cohen-Adad J, Picard PA, Gasecka A, Cote D, Pike GB. Quantitative analysis of the myelin g-ratio from electron microscopy images of the macaque corpus callosum Data Brief 2015;4:368-373.
  52. Stikov N, Campbell JS, Stroh T, Lavelee M, Frey S, Novek J, Nuara S, Ho MK, Bedell BJ, Dougherty RF, Leppert IR, Boudreau M, Narayanan S, Duval T, Cohen-Adad J, Picard PA, Gasecka A, Cote D, Pike GB. In vivo histology of the myelin g-ratio with magnetic resonance imaging Neuroimage 2015;118:397-405.
  53. Louapre C, Govindarajan ST, Gianni C, Cohen-Adad J, Gregory MD, Nielsen AS, Madigan N, Sloane JA, Kinkel RP, Mainero C. Is the Relationship between Cortical and White Matter Pathologic Changes in Multiple Sclerosis Spatially Specific? A Multimodal 7-T and 3-T MR Imaging Study with Surface and Tract-based Analysis Radiology 2015:150486.
  54. Eichner C, Cauley SF, Cohen-Adad J, Moller HE, Turner R, Setsompop K, Wald LL. Real diffusion-weighted MRI enabling true signal averaging and increased diffusion contrast Neuroimage 2015.
  55. Levy S, Benhamou M, Naaman C, Rainville P, Callot V, Cohen-Adad J. White matter atlas of the human spinal cord with estimation of partial volume effect Neuroimage 2015;119:262-271.
  56. Duval T, McNab JA, Setsompop K, Witzel T, Schneider T, Huang SY, Keil B, Klawiter EC, Wald LL, Cohen-Adad J. In vivo mapping of human spinal cord microstructure at 300mT/m Neuroimage 2015;118:494-507.
  57. De Leener B, Cohen-Adad J, Kadoury S. Automatic segmentation of the spinal cord and spinal canal coupled with vertebral labeling IEEE Trans Med Imaging 2015;34(8):1705-1718.
  58. Vahdat S, Lungu O, Cohen-Adad J, Marchand-Pauvert V, Benali H, Doyon J. Simultaneous Brain-Cervical Cord FMRI Reveals Intrinsic Spinal Cord Plasticity during Motor Sequence Learning PLoS Biol 2015;13(6):e1002186.
  59. Gagnon L, Sakadzic S, Lesage F, Musacchia JJ, Lefebvre J, Fang Q, Yucel MA, Evans KC, Mandeville ET, Cohen-Adad J, Polimeni JR, Yaseen MA, Lo EH, Greve DN, Buxton RB, Dale AM, Devor A, Boas DA. Quantifying the Microvascular Origin of BOLD-fMRI from First Principles with Two-Photon Microscopy and an Oxygen-Sensitive Nanoprobe J Neurosci 2015;35(8):3663-3675.
  60. Farooq H, Genis H, Alarcon J, Vuong B, Jivraj J, Yang VXD, Cohen-Adad J, Fehlings MG, Cadotte A. High resolution imaging of the central nervous system: how novel imaging methods combined with navigation strategies will advance patient care Prog Brain Res 2015;218:55-78.
  61. Mainero C, Louapre C, Govindarajan ST, Gianni C, Nielsen AS, Cohen-Adad J, Sloane J, Kinkel RP. A gradient in cortical pathology in multiple sclerosis by in vivo quantitative 7 T imaging Brain 2015;138(Pt 4):932-945.
  62. Huang SY, Nummenmaa A, Witzel T, Duval T, Cohen-Adad J, Wald LL, McNab JA. The impact of gradient strength on in vivo diffusion MRI estimates of axon diameter Neuroimage 2015;106:464-472.
  63. Govindarajan ST, Cohen-Adad J, Sormani MP, Fan AP, Louapre C, Mainero C. Reproducibility of T2* mapping in the human cerebral cortex in vivo at 7 Tesla MRI J Magn Reson Imaging 2015;42(2):290-296.
  64. Cadotte DW, Cadotte A, Cohen-Adad J, Fleet D, Livne M, Wilson JR, Mikulis D, Nugaeva N, Fehlings MG. Characterizing the location of spinal and vertebral levels in the human cervical spinal cord AJNR Am J Neuroradiol 2015;36(4):803-810.
  65. Hendrix P, Griessenauer CJ, Cohen-Adad J, Rajasekaran S, Cauley KA, Shoja MM, Pezeshk P, Shane Tubbs R. Spinal diffusion tensor imaging: A comprehensive review with emphasis on spinal cord anatomy and clinical applications Clin Anat 2015 Jan;28(1):88-95 doi: 10.1002/ca.22349
  66. Fonov VS, Le Troter A, Taso M, De Leener B, Leveque G, Benhamou M, Sdika M, Benali H, Pradat PF, Collins DL, Callot V, Cohen-Adad J. Framework for integrated MRI average of the spinal cord white and gray matter: the MNI-Poly-AMU template Neuroimage 2014;102P2:817-827.
  67. Cohen-Adad J, Martinez M, Delivet-Mongrain H, Rossignol S. Recovery of locomotion after partial spinal cord lesions in cats: assessment using behavioral, electrophysiological and imaging techniques Acta Neurobiol Exp (Wars) 2014;74(2):142-57.
  68. Ullmann E, Thong W, Pelletier Paquette JP, Cohen-Adad J. Automatic labeling of vertebral levels using a robust template-based approach Int J Biomed Imaging 2014;Article ID 719520, 9 pages.
  69. El Mendili MM, Cohen-Adad J, Pelegrini-Issac M, Rossignol S, Morizot-Koutlidis R, Marchand-Pauvert V, Iglesias C, Sangari S, Katz R, Lehericy S, Benali H, Pradat PF. Multi-parametric spinal cord MRI as potential progression marker in amyotrophic lateral sclerosis PLoS ONE 2014;9(4):e95516
  70. De Leener B, Kadoury S, Cohen-Adad J. Robust, accurate and fast automatic segmentation of the spinal cord Neuroimage 2014;98:528-536
  71. Verma T, Cohen-Adad J. Effect of respiration on the B0 field in the human spinal cord at 3T Magn Reson Med 2014;72(6):1629-1636.
  72. El Mendili MM, Chen R, Tiret B, Pelegrini-Issac M, Cohen-Adad J, Lehericy S, Pradat PF, Benali H. Validation of a semiautomated spinal cord segmentation method J Magn Reson Imaging 2015;41(2):454-459.
  73. Satpute A, Wager T, Cohen-Adad J, Bianciardi M, Choi J-K, Buhle J, Wald LL, Fedman Barret L. Identification of Discrete Functional Subregions of the Human Periaqueductal Gray Proc Natl Acad Sci U S A 2013 Oct 15; 110(42): 17101–17106 doi: 10.1073/pnas.1306095110
  74. Zhao W, Cohen-Adad J, Polimeni JR, Keil B, Guerin B, Setsompop K, Serano P, Mareyam A, Hoecht P, Wald LL. Nineteen-channel receive array and four-channel transmit array coil for cervical spinal cord imaging at 7T Magn Reson Med 2014;72(1):291-300.
  75. Wheeler-Kingshott CA, Stroman PW, Schwab JM, Bacon M, Bosma R, Brooks J, Cadotte DW, Carlstedt T, Ciccarelli O, Cohen-Adad J, Curt A, Evangelou N, Fehlings MG, Filippi M, Kelley BJ, Kollias S, Mackay A, Porro CA, Smith S, Strittmatter SM, Summers P, Thompson AJ, Tracey I. The current state-of-the-art of spinal cord imaging: applications Neuroimage 2014;84:1082-1093.
  76. Stikov N, Boudreau M, Tardif CL, Levesque IR, Barral JK, Pike GB. On the Accuracy of T1 Mapping: Searching for Common Ground Magnetic Resonance in Medicine 2014 doi: 10.1002/mrm.25135
  77. Mezer AA, Yeatman J, Stikov N, Kay K, Cho N, Dougherty RF, Perry LM, Parvizi J, Hua LH, Butts-Pauly K, Wandell BA. Measuring within the Voxel: Brain Tissue Volume in Individual Subjects Nature Medicine 2013; 19: 1667-1672
  78. Setsompop K, Kimmlingen R, Eberlein E, Witzel T, Cohen-Adad J, McNab JA, Keil B, Tisdall MD, Hoecht P, Dietz P, Cauley SF, Tountcheva V, Matschl V, Lenz H, Bhat H, Heberlein K, Potthast A, Thein H, Van Horn JD, Toga AW, Schmitt F, Lehne D, Rosen BR, Wedeen VJ, Wald LL. Pushing the limits of in vivo diffusion MRI for the Human Connectome Project NeuroImage 2013 Oct 15;80:220-33 doi: 10.1016/j.neuroimage.2013.05.078
  79. McNab JA, Edlow BL, Witzel T, Huang SY, Bhat H, Heberlein K, Feiweier T, Liu K, Keil B, Cohen-Adad J, Tisdall MD, Folkerth RD, Kinney HC, Wald LL. The Human Connectome Project and beyond: Initial applications of 300 mT/m gradients NeuroImage 2013 Oct 15;80:234-45 doi: 10.1016/j.neuroimage.2013.05.074
  80. Stroman PW, Wheeler-Kingshott C, Bacon M, Schwab JM, Bosma R, Brooks J, Cadotte D, Carlstedt T, Ciccarelli O, Cohen-Adad J, Curt A, Evangelou N, Fehlings MG, Filippi M, Kelley BJ, Kollias S, Mackay A, Porro CA, Smith S, Strittmatter SM, Summers P, Tracey I. The current state-of-the-art of spinal cord imaging: Methods Neuroimage 2014;84(C):1070-1081.
  81. Cadotte DW, Cohen-Adad J, Fehlings MG. Visualizing Integrative Functioning in the Human Brainstem and Spinal Cord With Spinal fMRI Clinical Neurosurgery 2013 Aug;60 Suppl 1:102-9 doi: 10.1227/01.neu.0000430767.87725.95
  82. Cohen-Adad J, El Mendili MM, Morizot-Koutlidis R, Lehericy S, Meininger V, Blancho S, Rossignol S, Benali H, Pradat P-F. Involvement of spinal sensory pathway in ALS and specificity of cord atrophy to lower motor neuron degeneration Amyotroph Lateral Scler Frontotemporal Degener 2013;14(1):30-38.
  83. Lundell H, Barthelemy D, Biering-Sorensen F, Cohen-Adad J, Nielsen JB, Dyrby TB. Fast diffusion tensor imaging and tractography of the whole cervical spinal cord using point spread function corrected echo planar imaging Magn Reson Med 2013;69(1):144-149.
  84. Cohen-Adad J, Zhao W, Keil B, Ratai E-M, Triantafyllou C, Lawson R, Dheel C, Wald LL, Rosen BR, Cudkowicz M, Atassi N. 7-T MRI of the spinal cord can detect lateral corticospinal tract abnormality in amyotrophic lateral sclerosis Muscle Nerve 2013;47(5):760-762.
  85. Bilgic B, Setsompop K, Cohen-Adad J, Yendiki A, Wald LL, Adalsteinsson E. Accelerated diffusion spectrum imaging with compressed sensing using adaptive dictionaries Magn Reson Med 2012 Dec;68(6):1747-54
  86. Stikov N. Improving the Accuracy of Cross-relaxation Imaging International Journal of Imaging Systems and Technology 2012; 22(1): 67-72
  87. Cohen-Adad J, Zhao W, Wald LL, Oaklander AL. 7T MRI of spinal cord injury Neurology 2012 Nov 27;79(22):2217.
  88. Bilgic B, Setsompop K, Cohen-Adad J, Wedeen VJ, Wald LL, Adalsteinsson E. Accelerated Diffusion Spectrum Imaging with Compressed Sensing using Adaptive Dictionaries Med Image Comput Comput Assist Interv 2012;15(Pt 3):1-9 Best paper award.
  89. Xie G, Piche M, Khoshejad M, Perlbarg V, Chen J-I, Hoge RD, Benali H, Rossignol S, Rainville P, Cohen-Adad J. Reduction of physiological noise with independent component analysis improves the detection of nociceptive responses with fMRI of the human spinal cord NeuroImage 2012 Oct 15;63(1):245-52.
  90. Setsompop K, Cohen-Adad J, Gagoski BA, Raij T, Yendiki A, Keil B, Wedeen VJ, Wald LL. Improving diffusion MRI using simultaneous multi-slice Echo Planar Imaging Neuroimage 2012 Oct 15;63(1):569-80
  91. Cohen-Adad J, Polimeni JR, Helmer KG, Benner T, McNab JA, Wald LL, Rosen B, Mainero C. T2* mapping and B0 orientation-dependence at 7T reveal cyto- and myeloarchitecture organization of the human cortex Neuroimage 2012;60:1006-1014.
  92. Cheng HLM, Stikov N, Ghugre N, Wright GA. Practical Clinical Applications of MR relaxometry Journal of Magnetic Resonance Imaging 2012; 36(4): 805-824 (2012)
  93. Sharman M, Cohen-Adad J, Descoteaux M, Messé A, Benali H, Lehericy S. Impact of outliers in diffusion tensor and Q-Ball imaging – clinical implications and correction strategies J Magn Reson Imaging 2011;33(6):1491-1502.
  94. Cohen-Adad J, Leblond H, Delivet-Mongrain H, Martinez M, Benali H, Rossignol S. Wallerian degeneration after spinal cord lesions in cats detected with diffusion tensor imaging Neuroimage 2011;57(3):1068-1076.
  95. Cohen-Adad J, El Mendili M-M, Lehéricy S, Pradat P-F, Blancho S, Rossignol S, Benali H. Demyelination and degeneration in the injured human spinal cord detected with diffusion and magnetization transfer MRI Neuroimage 2011;55(3):1024-1033.
  96. Cohen-Adad J, Mareyam A, Keil B, Polimeni JR, Wald LL. 32-channel RF coil optimized for brain and cervical spinal cord at 3 T Magn Reson Med 2011;66(4):1198-1208 Cover page
  97. Miller KL, Tijssen RHN, Stikov N, Okell T. Steady-state MRI: Methods for Neuroimaging Imaging in Medicine 2011; 3(1): 93-105.
  98. Nielsen AS, Kinkel RP, Tinelli E, Benner T, Cohen-Adad J, Mainero C. Focal cortical lesion detection in multiple sclerosis: 3 tesla DIR versus 7 tesla FLASH-T2 J Magn Reson Imaging 2011;DOI: 10.1002/jmri.22847.
  99. Cohen-Adad J, Descoteaux M, Wald LL. Quality assessment of high angular resolution diffusion imaging data using bootstrap on Q-ball reconstruction J Magn Reson Imaging 2011;33(5):1194-1208.
  100. Stikov N, Perry LM, Ryklevskaya E, Mezer A, Wandell BA, Pauly JM, Dougherty RF. Bound Pool Fractions Complement Diffusion Measures in Characterizing White Matter Micro and Macrostructure Neuroimage 2011; 54(2): 1112-1121.
  101. Cohen-Adad J, Benner T, Greve DN, Kinkel RP, Radding A, Fischl B, Rosen BR, Mainero C. In vivo evidence of disseminated subpial T2* signal changes in multiple sclerosis at 7 T: a surface-based analysis Neuroimage 2011;57(1):55-62 Cover page.
  102. Onu M, Gervai P, Cohen-Adad J, Lawrence J, Kornelsen J, Tomanek B, Sboto-Frankenstein UN. Human cervical spinal cord funiculi: investigation with magnetic resonance diffusion tensor imaging J Magn Reson Imaging 2010;31(4):829-837.
  103. Brieu N, Beaumont E, Dubeau S, Cohen-Adad J, Lesage F. Characterization of the hemodynamic response in vivo rat lumbar spinal cord by intrinsic optical imaging and laser speckle microscopy J Neurosci Methods 2010;30:191(2):151-157.
  104. Cohen-Adad J, Gauthier CJ, Brooks JCW, Slessarev M, Han J, Fisher JA, Rossignol S, Hoge RD. BOLD signal responses to controlled hypercapnia in human spinal cord Neuroimage 2010;50(3):1074-1084.
  105. Barral JK, Gudmundson E, Stikov N, Etezadi-Amoli M, Stoica P, Nishimura DG. A Robust Methodology for T1 Mapping Magnetic Resonance in Medicine 2010; 64(4): 1057-1067.
  106. Wassermann D, Cohen-Adad J, Lehericy S, Benali H, Rossignol S, Deriche R. Straightening the spinal cord using fiber tractography IEEE Int Symp Biom Imaging 2010:1377-1380.
  107. Piché M, Cohen-Adad J, Nejad MK, Perlbarg V, Xie G, Beaudoin G, Benali H, Rainville P. Characterization of cardiac-related noise in fMRI of the cervical spinal cord Magn Reson Imaging 2009;27(3):300-310.
  108. Cohen-Adad J, Hoge RD, Leblond H, Xie G, Beaudoin G, Song AW, Krueger G, Doyon J, Benali H, Rossignol S. Investigations on spinal cord fMRI of cats under ketamine Neuroimage 2009;44(2):328-339.
  109. Cohen-Adad J, Descoteaux M, Rossignol S, Hoge RD, Deriche R, Benali H. Detection of multiple pathways in the spinal cord using q-ball imaging Neuroimage 2008;42(2):739-749.
  110. Cohen-Adad J, Descoteaux M, Rossignol S, Hoge RD, Deriche R, Benali H. Detection of multiple pathways in the spinal cord white matter using q-ball imaging IEEE Int Symp Biom Imaging 2008:696 - 699.
  111. Cohen-Adad J, Benali H, Hoge RD, Rossignol S. In vivo DTI of the healthy and injured cat spinal cord at high spatial and angular resolution Neuroimage 2008;40(2):685-697.
  112. Cohen-Adad J, Benali H, Barrière G, Leblond H, Hoge RD, Rossignol S. Development of clinical diffusion tensor MRI of the spinal cord in a context of spinal cord injury IRBM 2008;29:255-260.
  113. Cohen-Adad J, Piche M, Rainville P, Benali H, Rossignol S. Impact of realignment on spinal functional MRI time series IEEE Eng Med Biol Soc 2007;1:2126-2129.
  114. Cohen-Adad J, Benali H, Rossignol S. Methodology for MR diffusion tensor imaging of the cat spinal cord IEEE Eng Med Biol Soc 2007;1:323-326.
  115. Chapuisat S, Cohen-Adad J, Grova C, Lina JM, Rossignol S, Doyon J, Benali H, Lesage F. Application of the general linear model to hemodynamic response estimation in diffuse optical imaging SPIE Photonics North 2007.
  116. Cohen-Adad J, Chapuisat S, Doyon J, Rossignol S, Lina JM, Benali H, Lesage F. Activation detection in diffuse optical imaging by means of the general linear model Med Image Anal 2007;11(6):616-629.
  117. Cohen-Adad J, Paul P, Morandi X, Jannin P. Knowledge modeling in image guided neurosurgery: application in understanding intra-operative brain shift SPIE Medical Imaging 2006;6141:709-716.

Newspaper/Public coverage


PhD theses:

  • De Leener, B. (2017). Development of an MRI template and analysis pipeline for the spinal cord and application in patients with spinal cord injury (Thèse de doctorat, École Polytechnique de Montréal). Tiré de
  • Duval, T. (2017). Quantification de la microstructure de la moelle épinière humaine par IRM et application chez des patients avec sclérose en plaques (Thèse de doctorat, École Polytechnique de Montréal). Tiré de

MSc theses:

  • Gros, C. (2018). Automatic Segmentation of Intramedullary Multiple Sclerosis Lesions (Mémoire de maîtrise, École Polytechnique de Montréal). Tiré de
  • Zaimi, A. (2018). Automatic axon and myelin segmentation of microscopy images and morphometrics extraction (Mémoire de maîtrise, École Polytechnique de Montréal). Tiré de
  • Germain, G. (2017). Une antenne hybride RF/shimming pour l'IRM de la moelle épinière (Mémoire de maîtrise, École Polytechnique de Montréal). Tiré de
  • Saliani, A. (2017). Construction d'un atlas de la microstructure de la matière blanche de la moelle épinière chez le rat à partir d'acquisitions histologiques (Mémoire de maîtrise, École Polytechnique de Montréal). Tiré de
  • Vuong, M.T. (2017). Comparison of Myelin Imaging Techniques in Ex Vivo Spinal Cord (Mémoire de maîtrise, École Polytechnique de Montréal). Tiré de
  • Lévy, S. (2016). Caractérisation de la microstructure des voies spinales humaines par IRM multiparamétrique (Mémoire de maîtrise, École Polytechnique de Montréal). Tiré de
  • Mangeat, G. (2016). Study of Human Cortical Microstructure Using Magnetization Transfer and T2* Mapping with Application in Multiple Sclerosis (Mémoire de maîtrise, École Polytechnique de Montréal). Tiré de
  • Foias, A. (2015). Design and Construction of a Highly Sensitive Coil for MRI of the Spinal Cord (Mémoire de maîtrise, École Polytechnique de Montréal). Tiré de
  • De Leener, B. (2014). Segmentation automatique de la moelle épinière sur des images de résonance magnétique par propagation de modèles déformables (Mémoire de maîtrise, École Polytechnique de Montréal). Tiré de