List of publications on Google Scholar and Pubmed


Journal articles

  1. Vahdat S, Khatibi A, Lungu O, Finsterbusch J, Büchel C, Cohen-Adad J, Marchand-Pauvert V, Doyon J. Resting-state brain and spinal cord networks in humans are functionally integrated. PLoS Biol 2020
  2. Kerbrat A, Gros C, Badji A, Bannier E, Galassi F, Combès B, Chouteau R, Labauge P, Ayrignac X, Carra Dallière C, Maranzano J, Zhuoquiong R, Granberg T, Ouellette R, Stawiarz L, Hillert J, Talbott J, Tachibana Y, Hori M, Kamiya K, Chougar L, Lefeuvre J, Reich DS, Nair G, Valsasina P, Rocca MA, Filippi M, Chu R, Bakshi R, Callot V, Pelletier J, Audoin B, Maarouf A, Collongues N, De Seze J, Edan G, Cohen-Adad J. Multiple sclerosis lesions in motor tracts from the brain to the cervical cord: spatial distribution and correlation with disability. Brain 2020
  3. Grussu F, Battiston M, Veraart J, Schneider T, Cohen-Adad J, Shepherd TM, Alexander DC, Fieremans E, Novikov DS, Gandini Wheeler-Kingshott CAM. Multi-parametric quantitative in vivo spinal cord MRI with unified signal readout and image denoising. Neuroimage 2020
  4. Bagnato F, Gauthier S, Laule C, Moore GR, Bove R, Cai J, Cohen-Adad J, Harrison D, Klawiter E, Oz G, Rooney B, Smith S. Imaging mechanisms of disease progression in multiple sclerosis: beyond brain atrophy. J Neuroimaging 2020
  5. Mangeat G, Ouellette R, Wabartha M, De Leener B, Plattén M, Danylaité Karrenbauer V, Warntjes M, Stikov N, Mainero C, Cohen-Adad J, Granberg T. Machine learning and multi-parametric brain MRI to differentiate hereditary diffuse leukodystrophy with spheroids from multiple sclerosis. J Neuroimaging 2020
  6. Ouellette R, Mangeat G, Polyak I, Warntjes M, Forslin Y, Bergendal Å, Plattén M, Uppman M, Treaba CA, Cohen-Adad J, Piehl F, Wiberg MK, Fredrikson S, Mainero C, Granberg T. Validation of Rapid Magnetic Resonance Myelin Imaging in Multiple Sclerosis. Ann Neurol 2020
  7. Barletta V, Herranz E, Treaba CA, Mehndiratta A, Ouellette R, Mangeat G, Sloane J, Cohen-Adad J, Mainero C. Cortical demyelination and remyelination in multiple sclerosis visualized with quantitative 7 Tesla MRI. Brain 2020
  8. Ouellette R, Treaba CA, Granberg T, Herranz E, Barletta V, Mehndiratta A, De Leener B, Tauhid S, Yousuf F, Dupont SM, Klawiter EC, Sloane JA, Bakshi R, Cohen-Adad J, Mainero C. Multiple sclerosis spinal cord pathology at 7T: proximity to CSF and relation with brain burden. Brain 2020
  9. Taghanaki SA, Abhishek K, Cohen JP, Cohen-Adad J, Hamarneh G. Deep Semantic Segmentation of Natural and Medical Images: A Review. Artificial Intelligence Review 2020
  10. Paugam F, Lefeuvre J, Perone CS, Gros C, Reich DS, Sati P, Cohen-Adad J. Open-source pipeline for multi-class segmentation of the spinal cord with deep learning. Magn Reson Imaging 2019
  11. Querin G, El Mendili MM, Lenglet T, Behin A, Stojkovic T, Salachas F, Devos D, Le Forestier N, Del Mar Amador M, Debs R, Lacomblez L, Meninger V, Bruneteau G, Cohen-Adad J, Lehéricy S, Laforêt P, Blancho S, Benali H, Catala M, Li M, Marchand-Pauvert V, Hogrel JY, Bede P, Pradat PF. The spinal and cerebral profile of adult spinal-muscular atrophy: A multimodal imaging study. Neuroimage Clin 2019
  12. Hagiwara A, Hori M, Cohen-Adad J, Nakazawa M, Suzuki Y, Kasahara A, Horita M, Haruyama T, Andica C, Maekawa T, Kamagata K, Kumamaru KK, Abe O, Aoki S. Linearity, Bias, Intrascanner Repeatability, and Interscanner Reproducibility of Quantitative Multidynamic Multiecho Sequence for Rapid Simultaneous Relaxometry at 3 T: A Validation Study With a Standardized Phantom and Healthy Controls. Invest Radiol 2019
  13. Gros C, De Leener B, Badji A, Maranzano J, Eden D, Dupont SM, Talbott J, Zhuoquiong R, Liu Y, Granberg T, Ouellette R, Tachibana Y, Hori M, Kamiya K, Chougar L, Stawiarz L, Hillert J, Bannier E, Kerbrat A, Edan G, Labauge P, Callot V, Pelletier J, Audoin B, Rasoanandrianina H, Brisset JC, Valsasina P, Rocca MA, Filippi M, Bakshi R, Tauhid S, Prados F, Yiannakas M, Kearney H, Ciccarelli O, Smith S, Treaba CA, Mainero C, Lefeuvre J, Reich DS, Nair G, Auclair V, McLaren DG, Martin AR, Fehlings MG, Vahdat S, Khatibi A, Doyon J, Shepherd T, Charlson E, Narayanan S, Cohen-Adad J. Automatic segmentation of the spinal cord and intramedullary multiple sclerosis lesions with convolutional neural networks. Neuroimage 2019
  14. Duval T, Saliani A, Nami H, Nanci A, Stikov N, Leblond H, Cohen-Adad J. Axons morphometry in the human spinal cord. Neuroimage 2019
  15. Eden D, Gros C, Badji A, Dupont SM, De Leener B, Maranzano J, Zhuoquiong R, Liu Y, Granberg T, Ouellette R, Stawiarz L, Hillert J, Talbott J, Bannier E, Kerbrat A, Edan G, Labauge P, Callot V, Pelletier J, Audoin B, Rasoanandrianina H, Brisset JC, Valsasina P, Rocca MA, Filippi M, Bakshi R, Tauhid S, Prados F, Yiannakas M, Kearney H, Ciccarelli O, Smith S, Treaba CA, Mainero C, Lefeuvre J, Reich DS, Nair G, Shepherd T, Charlson E, Tachibana Y, Hori M, Kamiya K, Chougar L, Narayanan S, Cohen-Adad J. Spatial distribution of multiple sclerosis lesions in the cervical spinal cord. Brain 2019
  16. Badji A, Noriega de la Colina A, Karakuzu A, Duval T, Desjardins-Crepeau L, Joubert S, Bherer L, Lamarre-Cliche M, Stikov N, Girouard H, Cohen-Adad J. Arterial stiffness and white matter integrity in the elderly: A diffusion tensor and magnetization transfer imaging study. Neuroimage 2019
  17. Perone CS, Ballester P, Barros RC, Cohen-Adad J. Unsupervised domain adaptation for medical imaging segmentation with self-ensembling. Neuroimage 2019
  18. Perone CS, Cohen-Adad J. Promises and limitations of deep learning for medical image segmentation. Journal of Medical Artificial Intelligence 2019
  19. McCoy DB, Dupont SM, Gros C, Cohen-Adad J, Huie RJ, Ferguson A, Duong-Fernandez X, Thomas LH, Singh V, Narvid J, Pascual L, Kyritsis N, Beattie MS, Bresnahan JC, Dhall S, Whetstone W, Talbott JF, Investigators T-S. Convolutional Neural Network-Based Automated Segmentation of the Spinal Cord and Contusion Injury: Deep Learning Biomarker Correlates of Motor Impairment in Acute Spinal Cord Injury. AJNR Am J Neuroradiol 2019
  20. Chougar L, Hagiwara A, Takano N, Andica C, Cohen-Adad J, Warntjes M, Maekawa T, Hori M, Koshino S, Nakazawa M, Abe O, Aoki S. Signal Intensity within Cerebral Venous Sinuses on Synthetic MRI. Magn Reson Med Sci 2019
  21. Seif M, Gandini Wheeler-Kingshott CA, Cohen-Adad J, Flanders AE, Freund P. Guidelines for the conduct of clinical trials in spinal cord injury: Neuroimaging biomarkers. Spinal Cord 2019
  22. Andica C, Hagiwara A, Kamagata K, Yokoyama K, Shimoji K, Saito A, Takenaka Y, Nakazawa M, Hori M, Cohen-Adad J, Takemura MY, Hattori N, Aoki S. Gray Matter Alterations in Early and Late Relapsing-Remitting Multiple Sclerosis Evaluated with Synthetic Quantitative Magnetic Resonance Imaging. Sci Rep 2019
  23. Querin G, Bede P, El Mendili MM, Li M, Pélégrini-Issac M, Rinaldi D, Catala M, Saracino D, Salachas F, Camuzat A, Marchand-Pauvert V, Cohen-Adad J, Colliot O, Le Ber I, Pradat P-F. Presymptomatic spinal cord pathology in c9orf72 mutation carriers: A longitudinal neuroimaging study. Ann Neurol 2019
  24. Karbasforoushan H, Cohen-Adad J, Dewald JPA. Brainstem and spinal cord MRI identifies altered sensorimotor pathways post-stroke. Nat Commun 2019
  25. Herranz E, Louapre C, Treaba CA, Govindarajan ST, Ouellette R, Mangeat G, Loggia ML, Cohen-Adad J, Klawiter EC, Sloane JA, Mainero C. Profiles of cortical inflammation in multiple sclerosis by 11C-PBR28 MR-PET and 7 Tesla imaging. Mult Scler 2019
  26. Gergely D, Mohammadi S, Martin A, Cohen-Adad J, Weiskopf N, Thompson A, Freund P. Traumatic and nontraumatic spinal cord injury: pathological insights from neuroimaging. Nat Rev Neurol 2019
  27. Saliani A, Zaimi A, Nami H, Duval T, Stikov N, Cohen-Adad J. Construction of a rat spinal cord atlas of axon morphometry. Neuroimage 2019
  28. Badji A, Noriega de la Colina A, Karakuzu A, Duval T, Desjardins-Crépeau L, Parizet M, Joubert S, Bherer L, Lamarre-Cliche M, Stikov N, Cohen-Adad J, Girouard H. Arterial stiffness cut-off value and white matter integrity in the elderly. Neuroimage Clin 2019
  29. Badji A, Sabra D, Bherer L, Cohen-Adad J, Girouard H, Gauthier C. Arterial stiffness and brain integrity: A review of MRI findings. Ageing Res Rev 2019
  30. Mangeat G, Badji A, Ouellette R, Treaba CA, Herranz E, Granberg T, Louapre C, Stikov N, Sloane JA, Bellec P, Mainero C, Cohen-Adad J. Changes in structural network are associated with cortical demyelination in early multiple sclerosis. Hum Brain Mapp 2018
  31. Gros C, De Leener B, Dupont SM, Martin AR, Fehlings MG, Bakshi R, Tummala S, Auclair V, McLaren DG, Callot V, Cohen-Adad J, Sdika M. Automatic spinal cord localization, robust to MRI contrasts using global curve optimization. Med Image Anal 2018
  32. Lopez Rios N, Pouliot P, Papoutsis K, Foias A, Stikov N, Lesage F, Dehaes M, Cohen-Adad J. Design and construction of an optimized transmit/receive hybrid birdcage resonator to improve full body images of medium-sized animals in 7T scanner. PLoS ONE 2018
  33. Levy S, Guertin MC, Khatibi A, Mezer A, Martinu K, Chen JI, Stikov N, Rainville P, Cohen-Adad J. Test-retest reliability of myelin imaging in the human spinal cord: Measurement errors versus region- and aging-induced variations. PLoS ONE 2018
  34. De Tillieux P, Topfer R, Foias A, Leroux I, El Maachi I, Leblond H, Stikov N, Cohen-Adad J. A pneumatic phantom for mimicking respiration-induced artifacts in spinal MRI. Magn Reson Med 2018
  35. Duval T, Smith V, Stikov N, Klawiter EC, Cohen-Adad J. Scan-rescan of axcaliber, macromolecular tissue volume, and g-ratio in the spinal cord. Magn Reson Med 2018
  36. Paquin ME, El Mendili MM, Gros C, Dupont SM, Cohen-Adad J, Pradat PF. Spinal Cord Gray Matter Atrophy in Amyotrophic Lateral Sclerosis. AJNR Am J Neuroradiol 2018
  37. Campbell JSW, Leppert IR, Narayanan S, Boudreau M, Duval T, Cohen-Adad J, Pike GB, Stikov N. Promise and pitfalls of g-ratio estimation with MRI. Neuroimage 2018
  38. De Leener B, Fonov VS, Collins DL, Callot V, Stikov N, Cohen-Adad J. PAM50: Unbiased multimodal template of the brainstem and spinal cord aligned with the ICBM152 space. Neuroimage 2018
  39. Albrecht DS, Ahmed SU, Kettner NW, Borra RJH, Cohen-Adad J, Deng H, Houle TT, Opalacz A, Roth SA, Melo MFV, Chen L, Mao J, Hooker JM, Loggia ML, Zhang Y. Neuroinflammation of the spinal cord and nerve roots in chronic radicular pain patients. Pain 2018
  40. Martin AR, De Leener B, Cohen-Adad J, Kalsi-Ryan S, Cadotte DW, Wilson JR, Tetreault L, Nouri A, Crawley A, Mikulis DJ, Ginsberg H, Massicotte EM, Fehlings MG. Monitoring for myelopathic progression with multiparametric quantitative MRI. PLoS ONE 2018
  41. Zaimi A, Wabartha M, Herman V, Antonsanti P-L, Perone CS, Cohen-Adad J. AxonDeepSeg: automatic axon and myelin segmentation from microscopy data using convolutional neural networks. Sci Rep 2018
  42. Martin AR, De Leener B, Cohen-Adad J, Cadotte DW, Nouri A, Wilson JR, Tetreault L, Crawley AP, Mikulis DJ, Ginsberg H, Fehlings MG. Can microstructural MRI detect subclinical tissue injury in subjects with asymptomatic cervical spinal cord compression? A prospective cohort study. BMJ Open 2018
  43. Perone CS, Calabrese E, Cohen-Adad J. Spinal cord gray matter segmentation using deep dilated convolutions. Sci Rep 2018
  44. Calabrese E, Adil SM, Cofer G, Perone CS, Cohen-Adad J, Lad SP, Johnson GA. Postmortem diffusion MRI of the entire human spinal cord at microscopic resolution. Neuroimage Clin 2018
  45. Lopez Rios N, Foias A, Lodygensky G, Dehaes M, Cohen-Adad J. Size-adaptable 13-channel receive array for brain MRI in human neonates at 3 T. NMR Biomed 2018
  46. Cadotte DW, Akbar MA, Fehlings MG, Stroman PW, Cohen-Adad J. What Has Been Learned from Magnetic Resonance Imaging Examination of the Injured Human Spinal Cord: A Canadian Perspective. J Neurotrauma 2018
  47. Lee L, Ljungberg E, Shin D, Figley C, Vavasour I, Rauscher A, Cohen-Adad J, Li D, Traboulsee A, MacKay A, Lee J, Kolind S. Inter-Vendor Reproducibility of Myelin Water Imaging Using a 3D Gradient and Spin Echo Sequence. Front Neurosci 2018
  48. Morozov D, Lopez Rios N, Duval T, Foias A, Cohen-Adad J. Effect of cardiac-related translational motion in diffusion MRI of the spinal cord. Magn Reson Imaging 2018
  49. Martin AR, De Leener B, Cohen-Adad J, Cadotte DW, Kalsi-Ryan S, Lange SF, Tetreault L, Nouri A, Crawley A, Mikulis DJ, Ginsberg H, Fehlings MG. Clinically Feasible Microstructural MRI to Quantify Cervical Spinal Cord Tissue Injury Using DTI, MT, and T2*-Weighted Imaging: Assessment of Normative Data and Reliability. AJNR Am J Neuroradiol 2017
  50. Dupont SM, De Leener B, Taso M, Le Troter A, Nadeau S, Stikov N, Callot V, Cohen-Adad J. Fully-integrated framework for the segmentation and registration of the spinal cord white and gray matter. Neuroimage 2017
  51. Duval T, Lévy S, Stikov N, Campbell J, Mezer A, Witzel T, Keil B, Smith V, Wald LL, Klawiter E, Cohen-Adad J. g-Ratio weighted imaging of the human spinal cord in vivo. Neuroimage 2017
  52. De Leener B, Lévy S, Dupont SM, Fonov VS, Stikov N, Louis Collins D, Callot V, Cohen-Adad J. SCT: Spinal Cord Toolbox, an open-source software for processing spinal cord MRI data. Neuroimage 2017
  53. McCoy DB, Talbott JF, Wilson M, Mamlouk M, Cohen-Adad J, Wilson M, Narvid J. MRI Atlas-Based Measurement of Spinal Cord Injury Predicts Outcome in Acute Flaccid Myelitis. AJNR Am J Neuroradiol 2017
  54. De Leener B, Mangeat G, Dupont S, Martin AR, Callot V, Stikov N, Fehlings MG, Cohen-Adad J. Topologically preserving straightening of spinal cord MRI. J Magn Reson Imaging 2017
  55. Khoshnejad M, Roy M, Martinu K, Chen JI, Cohen-Adad J, Grondin S, Rainville P. Brain processing of the temporal dimension of acute pain in short-term memory. Pain 2017
  56. Martin AR, De Leener B, Cohen-Adad J, Cadotte DW, Kalsi-Ryan S, Lange SF, Tetreault L, Nouri A, Crawley A, Mikulis DJ, Ginsberg H, Fehlings MG. A Novel MRI Biomarker of Spinal Cord White Matter Injury: T2*-Weighted White Matter to Gray Matter Signal Intensity Ratio. AJNR Am J Neuroradiol 2017
  57. Prados F, Ashburner J, Blaiotta C, Brosch T, Carballido-Gamio J, Cardoso MJ, Conrad BN, Datta E, Dávid G, Leener BD, Dupont SM, Freund P, Wheeler-Kingshott CAMG, Grussu F, Henry R, Landman BA, Ljungberg E, Lyttle B, Ourselin S, Papinutto N, Saporito S, Schlaeger R, Smith SA, Summers P, Tam R, Yiannakas MC, Zhu A, Cohen-Adad J. Spinal cord grey matter segmentation challenge. Neuroimage 2017
  58. Granberg T, Fan Q, Treaba CA, Ouellette R, Herranz E, Mangeat G, Louapre C, Cohen-Adad J, Klawiter EC, Sloane JA, Mainero C. In vivo characterization of cortical and white matter neuroaxonal pathology in early multiple sclerosis. Brain 2017
  59. Mingasson T, Duval T, Stikov N, Cohen-Adad J. AxonPacking: An Open-Source Software to Simulate Arrangements of Axons in White Matter. Front Neuroinform 2017
  60. Saliani A, Perraud B, Duval T, Stikov N, Rossignol S, Cohen-Adad J. Axon and Myelin Morphology in Animal and Human Spinal Cord. Front Neuroanat 2017
  61. Samson RS, Levy S, Schneider T, Smith AK, Smith SA, Cohen-Adad J, Gandini Wheeler-Kingshott CA. ZOOM or Non-ZOOM? Assessing Spinal Cord Diffusion Tensor Imaging Protocols for Multi-Centre Studies. PLoS ONE 2016
  62. Duval T, Stikov N, Cohen-Adad J. Modeling white matter microstructure. Funct Neurol 2016
  63. Zaimi A, Duval T, Gasecka A, Côté D, Stikov N, Cohen-Adad J. AxonSeg: open source software for axon and myelin segmentation and morphometric analysis. Front Neuroinform 2016
  64. Topfer R, Starewicz P, Lo KM, Metzemaekers K, Jette D, Hetherington HP, Stikov N, Cohen-Adad J. A 24-channel shim array for the human spinal cord: Design, evaluation, and application. Magn Reson Med 2016
  65. Craddock CR, S Margulies D, Bellec P, Nolan Nichols B, Alcauter S, A Barrios F, Burnod Y, J Cannistraci C, Cohen-Adad J, De Leener B, Dery S, Downar J, Dunlop K, R Franco A, Seligman Froehlich C, J Gerber A, S Ghosh S, J Grabowski T, Hill S, Sólon Heinsfeld A, Matthew Hutchison R, Kundu P, R Laird A, Liew SL, J Lurie D, G McLaren D, Meneguzzi F, Mennes M, Mesmoudi S, O'Connor D, H Pasaye E, Peltier S, Poline JB, Prasad G, Fraga Pereira R, Quirion PO, Rokem A, S Saad Z, Shi Y, C Strother S, Toro R, Q Uddin L, D Van Horn J, W Van Meter J, C Welsh R, Xu T. Brainhack: a collaborative workshop for the open neuroscience community. Gigascience 2016
  66. De Leener B, Taso M, Cohen-Adad J, Callot V. Segmentation of the human spinal cord. MAGMA 2016
  67. Cabana J-F, Gu Y, Boudreau M, Levesque IR, Atchia Y, Sled JG, Narayanan S, Arnold DL, Pike GB, Cohen-Adad J, Duval T, Vuong M-T, Stikov N. Quantitative magnetization transfer imaging made easy with qMTLab: Software for data simulation, analysis, and visualization. Concepts in Magnetic Resonance Part A 2016
  68. Louapre C, Govindarajan ST, Gianni C, Cohen-Adad J, Gregory MD, Nielsen AS, Madigan N, Sloane JA, Kinkel RP, Mainero C. Is the Relationship between Cortical and White Matter Pathologic Changes in Multiple Sclerosis Spatially Specific? A Multimodal 7-T and 3-T MR Imaging Study with Surface and Tract-based Analysis. Radiology 2016
  69. Huang SY, Nummenmaa A, Witzel T, Duval T, Cohen-Adad J, Wald LL, McNab JA. The impact of gradient strength on in vivo diffusion MRI estimates of axon diameter. Neuroimage 2015
  70. De Leener B, Cohen-Adad J, Kadoury S. Automatic segmentation of the spinal cord and spinal canal coupled with vertebral labeling. IEEE Trans Med Imaging 2015
  71. El Mendili MM, Chen R, Tiret B, Pelegrini-Issac M, Cohen-Adad J, Lehericy S, Pradat PF, Benali H. Validation of a semiautomated spinal cord segmentation method. J Magn Reson Imaging 2015
  72. Hendrix P, Griessenauer CJ, Cohen-Adad J, Rajasekaran S, Cauley KA, Shoja MM, Pezeshk P, Shane Tubbs R. Spinal diffusion tensor imaging: A comprehensive review with emphasis on spinal cord anatomy and clinical applications. Clin Anat 2015
  73. Cadotte DW, Cadotte A, Cohen-Adad J, Fleet D, Livne M, Wilson JR, Mikulis D, Nugaeva N, Fehlings MG. Characterizing the location of spinal and vertebral levels in the human cervical spinal cord. AJNR Am J Neuroradiol 2015
  74. Govindarajan ST, Cohen-Adad J, Sormani MP, Fan AP, Louapre C, Mainero C. Reproducibility of T2* mapping in the human cerebral cortex in vivo at 7 Tesla MRI. J Magn Reson Imaging 2015
  75. Mainero C, Louapre C, Govindarajan ST, Gianni C, Nielsen AS, Cohen-Adad J, Sloane J, Kinkel RP. A gradient in cortical pathology in multiple sclerosis by in vivo quantitative 7 T imaging. Brain 2015
  76. Farooq H, Genis H, Alarcon J, Vuong B, Jivraj J, Yang VXD, Cohen-Adad J, Fehlings MG, Cadotte A. High resolution imaging of the central nervous system: how novel imaging methods combined with navigation strategies will advance patient care. Prog Brain Res 2015
  77. Gagnon L, Sakadzic S, Lesage F, Musacchia JJ, Lefebvre J, Fang Q, Yucel MA, Evans KC, Mandeville ET, Cohen-Adad J, Polimeni JR, Yaseen MA, Lo EH, Greve DN, Buxton RB, Dale AM, Devor A, Boas DA. Quantifying the microvascular origin of BOLD-fMRI from first principles with two-photon microscopy and an oxygen-sensitive nanoprobe. J Neurosci 2015
  78. Vahdat S, Lungu O, Cohen-Adad J, Marchand-Pauvert V, Benali H, Doyon J. Simultaneous Brain-Cervical Cord FMRI Reveals Intrinsic Spinal Cord Plasticity during Motor Sequence Learning. PLoS Biol 2015
  79. Duval T, McNab JA, Setsompop K, Witzel T, Schneider T, Huang SY, Keil B, Klawiter EC, Wald LL, Cohen-Adad J. In vivo mapping of human spinal cord microstructure at 300mT/m. Neuroimage 2015
  80. Levy S, Benhamou M, Naaman C, Rainville P, Callot V, Cohen-Adad J. White matter atlas of the human spinal cord with estimation of partial volume effect. Neuroimage 2015
  81. Eichner C, Cauley SF, Cohen-Adad J, Moller HE, Turner R, Setsompop K, Wald LL. Real diffusion-weighted MRI enabling true signal averaging and increased diffusion contrast. Neuroimage 2015
  82. Stikov N, Campbell JS, Stroh T, Lavelee M, Frey S, Novek J, Nuara S, Ho MK, Bedell BJ, Dougherty RF, Leppert IR, Boudreau M, Narayanan S, Duval T, Cohen-Adad J, Picard PA, Gasecka A, Cote D, Pike GB. In vivo histology of the myelin g-ratio with magnetic resonance imaging. Neuroimage 2015
  83. Stikov N, Campbell JS, Stroh T, Lavelee M, Frey S, Novek J, Nuara S, Ho MK, Bedell BJ, Dougherty RF, Leppert IR, Boudreau M, Narayanan S, Duval T, Cohen-Adad J, Picard PA, Gasecka A, Cote D, Pike GB. Quantitative analysis of the myelin g-ratio from electron microscopy images of the macaque corpus callosum. Data Brief 2015
  84. Yiannakas MC, Mustafa A, De Leener B, Kearney H, Tur C, Altmann DR, De Angelis F, Plantone D, Ciccarelli O, Miller DH, Cohen-Adad J, Wheeler-Kingshott C. Fully automated segmentation of the cervical cord from T1-weighted MRI using PropSeg: Application to multiple sclerosis. Neuroimage Clin 2015
  85. Martin AR, Aleksanderek I, Cohen-Adad J, Tarmohamed Z, Tetreault L, Smith N, Cadotte DW, Crawley AP, Ginsberg H, Mikulis D, Fehlings MG. Translating state-of-the-art spinal cord MRI techniques to clinical use: A systematic review of clinical studies utilizing DTI, MT, MWF, MRS, and fMRI. Neuroimage Clin 2015
  86. Cohen-Adad J. What can we learn from T2* maps of the cortex?. Neuroimage 2014
  87. Stroman PW, Wheeler-Kingshott C, Bacon M, Schwab JM, Bosma R, Brooks J, Cadotte D, Carlstedt T, Ciccarelli O, Cohen-Adad J, Curt A, Evangelou N, Fehlings MG, Filippi M, Kelley BJ, Kollias S, Mackay A, Porro CA, Smith S, Strittmatter SM, Summers P, Tracey I. The current state-of-the-art of spinal cord imaging: methods. Neuroimage 2014
  88. Wheeler-Kingshott CA, Stroman PW, Schwab JM, Bacon M, Bosma R, Brooks J, Cadotte DW, Carlstedt T, Ciccarelli O, Cohen-Adad J, Curt A, Evangelou N, Fehlings MG, Filippi M, Kelley BJ, Kollias S, Mackay A, Porro CA, Smith S, Strittmatter SM, Summers P, Thompson AJ, Tracey I. The current state-of-the-art of spinal cord imaging: applications. Neuroimage 2014
  89. Zhao W, Cohen-Adad J, Polimeni JR, Keil B, Guerin B, Setsompop K, Serano P, Mareyam A, Hoecht P, Wald LL. Nineteen-channel receive array and four-channel transmit array coil for cervical spinal cord imaging at 7T. Magn Reson Med 2014
  90. Stikov N, Boudreau M, Tardif CL, Levesque IR, Barral JK, Pike GB. On the Accuracy of T1 Mapping: Searching for Common Ground.. Magnetic Resonance in Medicine 2014
  91. De Leener B, Kadoury S, Cohen-Adad J. Robust, accurate and fast automatic segmentation of the spinal cord. Neuroimage 2014
  92. El Mendili MM, Cohen-Adad J, Pelegrini-Issac M, Rossignol S, Morizot-Koutlidis R, Marchand-Pauvert V, Iglesias C, Sangari S, Katz R, Lehericy S, Benali H, Pradat PF. Multi-parametric spinal cord MRI as potential progression marker in amyotrophic lateral sclerosis. PLoS ONE 2014
  93. Ullmann E, Thong W, Pelletier Paquette JP, Cohen-Adad J. Automatic labeling of vertebral levels using a robust template-based approach. Int J Biomed Imaging 2014
  94. Cohen-Adad J, Martinez M, Delivet-Mongrain H, Rossignol S. Recovery of locomotion after partial spinal cord lesions in cats: assessment using behavioral, electrophysiological and imaging techniques. Acta Neurobiol Exp (Wars) 2014
  95. Fonov VS, Le Troter A, Taso M, De Leener B, Leveque G, Benhamou M, Sdika M, Benali H, Pradat PF, Collins DL, Callot V, Cohen-Adad J. Framework for integrated MRI average of the spinal cord white and gray matter: the MNI-Poly-AMU template. Neuroimage 2014
  96. Cohen-Adad J, Zhao W, Keil B, Ratai E-M, Triantafyllou C, Lawson R, Dheel C, Wald LL, Rosen BR, Cudkowicz M, Atassi N. 7-T MRI of the spinal cord can detect lateral corticospinal tract abnormality in amyotrophic lateral sclerosis. Muscle Nerve 2013
  97. Cohen-Adad J, El Mendili MM, Morizot-Koutlidis R, Lehericy S, Meininger V, Blancho S, Rossignol S, Benali H, Pradat P-F. Involvement of spinal sensory pathway in ALS and specificity of cord atrophy to lower motor neuron degeneration. Amyotroph Lateral Scler Frontotemporal Degener 2013
  98. Lundell H, Barthelemy D, Biering-Sorensen F, Cohen-Adad J, Nielsen JB, Dyrby TB. Fast diffusion tensor imaging and tractography of the whole cervical spinal cord using point spread function corrected echo planar imaging. Magn Reson Med 2013
  99. Mezer AA, Yeatman J, Stikov N, Kay K, Cho N, Dougherty RF, Perry LM, Parvizi J, Hua LH, Butts-Pauly K, Wandell BA. Measuring within the Voxel: Brain Tissue Volume in Individual Subjects.. Nature Medicine 2013
  100. McNab JA, Edlow BL, Witzel T, Huang SY, Bhat H, Heberlein K, Feiweier T, Liu K, Keil B, Cohen-Adad J, Tisdall MD, Folkerth RD, Kinney HC, Wald LL. The Human Connectome Project and beyond: initial applications of 300 mT/m gradients. NeuroImage 2013
  101. Setsompop K, Kimmlingen R, Eberlein E, Witzel T, Cohen-Adad J, McNab JA, Keil B, Tisdall MD, Hoecht P, Dietz P, Cauley SF, Tountcheva V, Matschl V, Lenz H, Bhat H, Heberlein K, Potthast A, Thein H, Van Horn JD, Toga AW, Schmitt F, Lehne D, Rosen BR, Wedeen VJ, Wald LL. Pushing the limits of in vivo diffusion MRI for the Human Connectome Project. NeuroImage 2013
  102. Satpute A, Wager T, Cohen-Adad J, Bianciardi M, Choi J-K, Buhle J, Wald LL, Fedman Barret L. Identification of discrete functional subregions of the human periaqueductal gray. Proc Natl Acad Sci U S A 2013
  103. Bilgic B, Setsompop K, Cohen-Adad J, Yendiki A, Wald LL, Adalsteinsson E. Accelerated diffusion spectrum imaging with compressed sensing using adaptive dictionaries. Magn Reson Med 2012
  104. Xie G, Piche M, Khoshejad M, Perlbarg V, Chen J-I, Hoge RD, Benali H, Rossignol S, Rainville P, Cohen-Adad J. Reduction of physiological noise with independent component analysis improves the detection of nociceptive responses with fMRI of the human spinal cord. NeuroImage 2012
  105. Setsompop K, Cohen-Adad J, Gagoski BA, Raij T, Yendiki A, Keil B, Wedeen VJ, Wald LL. Improving diffusion MRI using simultaneous multi-slice echo planar imaging. Neuroimage 2012
  106. Cohen-Adad J, Polimeni JR, Helmer KG, Benner T, McNab JA, Wald LL, Rosen B, Mainero C. T2* mapping and B0 orientation-dependence at 7T reveal cyto- and myeloarchitecture organization of the human cortex. Neuroimage 2012
  107. Nielsen AS, Kinkel RP, Tinelli E, Benner T, Cohen-Adad J, Mainero C. Focal cortical lesion detection in multiple sclerosis: 3 Tesla DIR versus 7 Tesla FLASH-T2. J Magn Reson Imaging 2012
  108. Cheng HLM, Stikov N, Ghugre N, Wright GA. Practical Clinical Applications of MR relaxometry. Journal of Magnetic Resonance Imaging 2012
  109. Stikov N. Improving the Accuracy of Cross-relaxation Imaging. International Journal of Imaging Systems and Technology 2012
  110. Cohen-Adad J, Zhao W, Wald LL, Oaklander AL. 7T MRI of spinal cord injury. Neurology 2012
  111. Miller KL, Tijssen RHN, Stikov N, Okell. Steady-state MRI: Methods for Neuroimaging.. Imaging in Medicine 2011
  112. Stikov N, Perry LM, Ryklevskaya E, Mezer A, Wandell BA, Pauly JM, Dougherty RF. Bound Pool Fractions Complement Diffusion Measures in Characterizing White Matter Micro and Macrostructure. Neuroimage 2011
  113. Cohen-Adad J, Benner T, Greve DN, Kinkel RP, Radding A, Fischl B, Rosen BR, Mainero C. In vivo evidence of disseminated subpial T2* signal changes in multiple sclerosis at 7 T: a surface-based analysis. Neuroimage 2011
  114. Cohen-Adad J, Mareyam A, Keil B, Polimeni JR, Wald LL. 32-channel RF coil optimized for brain and cervical spinal cord at 3 T. Magn Reson Med 2011
  115. Cohen-Adad J, El Mendili M-M, Lehéricy S, Pradat P-F, Blancho S, Rossignol S, Benali H. Demyelination and degeneration in the injured human spinal cord detected with diffusion and magnetization transfer MRI. Neuroimage 2011
  116. Cohen-Adad J, Leblond H, Delivet-Mongrain H, Martinez M, Benali H, Rossignol S. Wallerian degeneration after spinal cord lesions in cats detected with diffusion tensor imaging. Neuroimage 2011
  117. Sharman M, Cohen-Adad J, Descoteaux M, Messé A, Benali H, Lehericy S. Impact of outliers on diffusion tensor and Q-ball imaging: clinical implications and correction strategies. J Magn Reson Imaging 2011
  118. Onu M, Gervai P, Cohen-Adad J, Lawrence J, Kornelsen J, Tomanek B, Sboto-Frankenstein UN. Human cervical spinal cord funiculi: investigation with magnetic resonance diffusion tensor imaging. J Magn Reson Imaging 2010
  119. Cohen-Adad J, Gauthier CJ, Brooks JCW, Slessarev M, Han J, Fisher JA, Rossignol S, Hoge RD. BOLD signal responses to controlled hypercapnia in human spinal cord. Neuroimage 2010
  120. Barral JK, Gudmundson E, Stikov N, Etezadi-Amoli M, Stoica P, Nishimura DG. A Robust Methodology for T1 Mapping. Magnetic Resonance in Medicine 2010
  121. Piché M, Cohen-Adad J, Nejad MK, Perlbarg V, Xie G, Beaudoin G, Benali H, Rainville P. Characterization of cardiac-related noise in fMRI of the cervical spinal cord. Magn Reson Imaging 2009
  122. Cohen-Adad J, Hoge RD, Leblond H, Xie G, Beaudoin G, Song AW, Krueger G, Doyon J, Benali H, Rossignol S. Investigations on spinal cord fMRI of cats under ketamine. Neuroimage 2009
  123. Cohen-Adad J, Descoteaux M, Rossignol S, Hoge RD, Deriche R, Benali H. Detection of multiple pathways in the spinal cord using q-ball imaging. Neuroimage 2008
  124. Cohen-Adad J, Benali H, Hoge RD, Rossignol S. In vivo DTI of the healthy and injured cat spinal cord at high spatial and angular resolution. Neuroimage 2008
  125. Cohen-Adad J, Benali H, Barrière G, Leblond H, Hoge RD, Rossignol S. Development of clinical diffusion tensor MRI of the spinal cord in a context of spinal cord injury. IRBM 2008
  126. Cohen-Adad J, Chapuisat S, Doyon J, Rossignol S, Lina JM, Benali H, Lesage F. Activation detection in diffuse optical imaging by means of the general linear model. Med Image Anal 2007

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PhD theses:

  • De Leener, B. (2017). Development of an MRI template and analysis pipeline for the spinal cord and application in patients with spinal cord injury (Thèse de doctorat, École Polytechnique de Montréal). Tiré de
  • Duval, T. (2017). Quantification de la microstructure de la moelle épinière humaine par IRM et application chez des patients avec sclérose en plaques (Thèse de doctorat, École Polytechnique de Montréal). Tiré de

MScA theses:

  • Samuel Perone, C. (2019). Deep Learning Methods for MRI Spinal Cord Gray Matter Segmentation. (Masters thesis, Polytechnique Montréal).
  • Nami, H. (2019). Clustering of the White Matter Tracts in the Rat Spinal Cord Based on Quantitative Histology. (Masters thesis, Polytechnique Montréal).
  • Gros, C. (2018). Automatic Segmentation of Intramedullary Multiple Sclerosis Lesions (Mémoire de maîtrise, École Polytechnique de Montréal). Tiré de
  • Zaimi, A. (2018). Automatic axon and myelin segmentation of microscopy images and morphometrics extraction (Mémoire de maîtrise, École Polytechnique de Montréal). Tiré de
  • Germain, G. (2017). Une antenne hybride RF/shimming pour l'IRM de la moelle épinière (Mémoire de maîtrise, École Polytechnique de Montréal). Tiré de
  • Saliani, A. (2017). Construction d'un atlas de la microstructure de la matière blanche de la moelle épinière chez le rat à partir d'acquisitions histologiques (Mémoire de maîtrise, École Polytechnique de Montréal). Tiré de
  • Vuong, M.T. (2017). Comparison of Myelin Imaging Techniques in Ex Vivo Spinal Cord (Mémoire de maîtrise, École Polytechnique de Montréal). Tiré de
  • Lévy, S. (2016). Caractérisation de la microstructure des voies spinales humaines par IRM multiparamétrique (Mémoire de maîtrise, École Polytechnique de Montréal). Tiré de
  • Mangeat, G. (2016). Study of Human Cortical Microstructure Using Magnetization Transfer and T2* Mapping with Application in Multiple Sclerosis (Mémoire de maîtrise, École Polytechnique de Montréal). Tiré de
  • Foias, A. (2015). Design and Construction of a Highly Sensitive Coil for MRI of the Spinal Cord (Mémoire de maîtrise, École Polytechnique de Montréal). Tiré de
  • De Leener, B. (2014). Segmentation automatique de la moelle épinière sur des images de résonance magnétique par propagation de modèles déformables (Mémoire de maîtrise, École Polytechnique de Montréal). Tiré de