PUBLICATIONS

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Journal articles

  1. Martin AR, De Leener B, Cohen-Adad J, Cadotte DW, Kalsi-Ryan S, Lange SF, Tetreault L, Nouri A, Crawley A, Mikulis DJ, Ginsberg H, Fehlings MG. A Novel MRI Biomarker of Spinal Cord White Matter Injury: T2*-Weighted White Matter to Gray Matter Signal Intensity Ratio. AJNR Am J Neuroradiol. 2017 Apr 20. doi: 10.3174/ajnr.A5162.
  2. Martin AR, De Leener B, Cohen-Adad J, Cadotte DW, Kalsi-Ryan S, Lange SF, Tetreault L, Nouri A, Crawley A, Mikulis DJ, Ginsberg H, Fehlings MG. Clinically Feasible Microstructural MRI to Quantify Cervical Spinal Cord Tissue Injury Using DTI, MT, and T2*-Weighted Imaging: Assessment of Normative Data and Reliability. AJNR Am J Neuroradiol. 2017 Apr 20. doi: 10.3174/ajnr.A5163.
  3. De Tillieux, P., Topfer, R., Foias, A., Leroux, I., El Maâchi, I., Leblond, H., Stikov, N. and Cohen-Adad, J. (2017), A pneumatic phantom for mimicking respiration-induced artifacts in spinal MRI. Magn. Reson. Med.. doi:10.1002/mrm.26679
  4. Duval T, Stikov N, Cohen-Adad J. Modeling white matter microstructure. Funct Neurol. 2016 Oct/Dec;31(4):217-228.
  5. De Leener B, Mangeat G, Dupont S, Martin AR, Callot V, Stikov N, Fehlings MG, Cohen-Adad J. Topologically-preserving straightening of spinal cord MRI. J Magn Reson Imaging 2016.
  6. McCoy DB, Talbott JF, Wilson M, Mamlouk M, Cohen-Adad J, Wilson M, Narvid J. MRI Atlas-Based Measurement of Spinal Cord Injury Predicts Outcome in Acute Flaccid Myelitis. AJNR Am J Neuroradiol. 2016 Dec 15. doi: 10.3174/ajnr.A5044.
  7. De Leener B, Lévy S, Dupont SM, Fonov VS, Stikov N, Louis Collins D, Callot V, Cohen-Adad J. SCT: Spinal Cord Toolbox, an open-source software for processing spinal cord MRI data. Neuroimage. 2017 Jan 15;145(Pt A):24-43.
  8. Cohen-Adad J. Functional Magnetic Resonance Imaging of the Spinal Cord: Current Status and Future Developments. Semin Ultrasound CT MR 2016. doi: 10.1053/j.sult.2016.07.007
  9. Duval T, Levy S, Stikov N, Campbell J, Mezer A, Witzel T, Keil B, Smith V, Wald LL, Klawiter E, Cohen-Adad J. g-Ratio weighted imaging of the human spinal cord in vivo. Neuroimage 2016. doi: 10.1016/j.neuroimage.2016.09.018
  10. Dupont SM, De Leener B, Taso M, Le Troter A, Stikov N, Callot V, Cohen-Adad J. Fully-integrated framework for the segmentation and registration of the spinal cord white and gray matter. Neuroimage 2016. doi: 10.1016/j.neuroimage.2016.09.026
  11. Zaimi A, Duval T, Gasecka A, Côté D, Stikov N, Cohen-Adad J. AxonSeg: open source software for axon and myelin segmentation and morphometric analysis. Front Neuroinform 2016;10(37).
  12. Topfer R, Starewicz P, Lo KM, Metzemaekers K, Jette D, Hetherington HP, Stikov N, Cohen-Adad J. A 24-channel shim array for the human spinal cord: Design, evaluation, and application. Magn Reson Med 2016.
  13. Cabana J-F, Gu Y, Boudreau M, Levesque IR, Atchia Y, Sled JG, Narayanan S, Arnold DL, Pike GB, Cohen-Adad J, Duval T, Vuong M-T, Stikov N. Quantitative magnetization transfer imaging made easy with qMTLab: Software for data simulation, analysis, and visualization. Concepts in Magnetic Resonance Part A 2015;44A(5):263-277.
  14. Cameron Craddock R, D SM, Bellec P, Nolan Nichols B, Alcauter S, F AB, Burnod Y, C JC, Cohen-Adad J, De Leener B, Dery S, Downar J, Dunlop K, A RF, Seligman Froehlich C, A JG, S SG, T JG, Hill S, Solon Heinsfeld A, Matthew Hutchison R, Kundu P, A RL, Liew SL, D JL, D GM, Meneguzzi F, Mennes M, Mesmoudi S, O'Connor D, E HP, Peltier S, Poline JB, Prasad G, Fraga Pereira R, Quirion PO, Rokem A, Z SS, Shi Y, S CS, Toro R, L QU, J DVH, J WVM, R CW, Xu T. Brainhack: a collaborative workshop for the open neuroscience community. Gigascience 2016;5:16.
  15. Samson RS, Levy S, Schneider GE, Smith AK, Smith SA, Cohen-Adad J, Wheeler-Kingshott C. ZOOM or non-ZOOM? Assessing Spinal Cord Diffusion Tensor Imaging protocols for multi-centre studies. PLoS ONE 2016.
  16. Martin AR, Aleksanderek I, Cohen-Adad J, Tarmohamed Z, Tetreault L, Smith N, Cadotte DW, Crawley AP, Ginsberg H, Mikulis D, Fehlings MG. Translating State-Of-The-Art Spinal Cord MRI Techniques To Clinical Use: A Systematic Review Of Clinical Studies Utilizing DTI, MT, MWF, MRS, and fMRI. Neuroimage Clin 2015.
  17. Yiannakas MC, Mustafa A, De Leener B, Kearney H, Tur C, Altmann DR, De Angelis F, Plantone D, Ciccarelli O, Miller DH, Cohen-Adad J, Wheeler-Kingshott C. Fully Automated Segmentation of the Cervical Cord from T1-Weighted MRI Using PropSeg: Application to Multiple Sclerosis. Neuroimage Clin 2015.
  18. De Leener B, Taso M, Cohen-Adad J, Callot V. Segmentation of the human spinal cord. MAGMA 2015.
  19. Cadotte A, Cadotte DW, Livne M, Cohen-Adad J, Fleet D, Mikulis D, Fehlings MG. Spinal Cord Segmentation by One Dimensional Normalized Template Matching: A Novel, Quantitative Technique to Analyze Advanced Magnetic Resonance Imaging Data. PLoS ONE 2015;10(10):e0139323.
  20. Louapre C, Govindarajan ST, Gianni C, Cohen-Adad J, Gregory MD, Nielsen AS, Madigan N, Sloane JA, Kinkel RP, Mainero C. Is the Relationship between Cortical and White Matter Pathologic Changes in Multiple Sclerosis Spatially Specific? A Multimodal 7-T and 3-T MR Imaging Study with Surface and Tract-based Analysis. Radiology 2015:150486.
  21. Eichner C, Cauley SF, Cohen-Adad J, Moller HE, Turner R, Setsompop K, Wald LL. Real diffusion-weighted MRI enabling true signal averaging and increased diffusion contrast. Neuroimage 2015.
  22. Levy S, Benhamou M, Naaman C, Rainville P, Callot V, Cohen-Adad J. White matter atlas of the human spinal cord with estimation of partial volume effect. Neuroimage 2015;119:262-271.
  23. Duval T, McNab JA, Setsompop K, Witzel T, Schneider T, Huang SY, Keil B, Klawiter EC, Wald LL, Cohen-Adad J. In vivo mapping of human spinal cord microstructure at 300mT/m. Neuroimage 2015;118:494-507.
  24. De Leener B, Cohen-Adad J, Kadoury S. Automatic segmentation of the spinal cord and spinal canal coupled with vertebral labeling. IEEE Transactions on Medical Imaging 2015 Aug;34(8):1705-18.
  25. Vahdat S, Lungu O, Cohen-Adad J, Marchand-Pauvert V, Benali H, Doyon J. Simultaneous Brain-Cervical Cord FMRI Reveals Intrinsic Spinal Cord Plasticity during Motor Sequence Learning. PLoS Biol 2015;13(6):e1002186.
  26. Stikov N*, Campbell JSW*, Stroh T, Lavelée M, Frey S, Novek J, Nuara S, Ho M, Bedell BJ, Dougherty RF, Leppert IR, Boudreau M, Narayanan S, Picard P, Duval T, Cohen-Adad J, Gasecka A, Côté D, Pike GB. In vivo histology of the myelin g-ratio with magnetic resonance imaging. Neuroimage 2015. *These authors contributed equally to this work
  27. Stikov N*, Campbell JSW*, Stroh T, Lavelée M, Frey S, Novek J, Nuara S, Ho M, Bedell BJ, Dougherty RF, Leppert IR, Boudreau M, Narayanan S, Picard P, Duval T, Cohen-Adad J, Gasecka A, Côté D, Pike GB. Quantitative analysis of the myelin g-ratio from electron microscopy images of the macaque corpus callosum. Data in Brief 2015 *These authors contributed equally to this work
  28. Gagnon L, Sakadzic S, Lesage F, Musacchia JJ, Lefebvre J, Fang Q, Yucel MA, Evans KC, Mandeville ET, Cohen-Adad J, Polimeni JR, Yaseen MA, Lo EH, Greve DN, Buxton RB, Dale AM, Devor A, Boas DA. Quantifying the Microvascular Origin of BOLD-fMRI from First Principles with Two-Photon Microscopy and an Oxygen-Sensitive Nanoprobe. J Neurosci 2015;35(8):3663-3675.
  29. Farooq H, Genis H, Alarcon J, Vuong B, Jivraj J, Yang VXD, Cohen-Adad J, Fehlings MG, Cadotte A. High resolution imaging of the central nervous system: how novel imaging methods combined with navigation strategies will advance patient care. Prog Brain Res.
  30. Stikov N, Boudreau M, Tardif CL, Levesque IR, Barral JK, Pike GB. On the Accuracy of T1 Mapping: Searching for Common Ground. Magnetic Resonance in Medicine 2014. doi: 10.1002/mrm.25135
  31. Mainero C, Louapre C, Govindarajan ST, Gianni C, Nielsen AS, Cohen-Adad J, Sloane J, Kinkel RP. A gradient in cortical pathology in multiple sclerosis by in vivo quantitative 7 T imaging. Brain 2015;138(Pt 4):932-945.
  32. Huang SY, Nummenmaa A, Witzel T, Duval T, Cohen-Adad J, Wald LL, McNab JA. The impact of gradient strength on in vivo diffusion MRI estimates of axon diameter. Neuroimage 2014.
  33. Govindarajan ST, Cohen-Adad J, Sormani MP, Fan AP, Louapre C, Mainero C. Reproducibility of T2* mapping in the human cerebral cortex in vivo at 7 Tesla MRI. J Magn Reson Imaging 2014.
  34. Cadotte DW, Cadotte A, Cohen-Adad J, Fleet D, Livne M, Wilson JR, Mikulis D, Nugaeva N, Fehlings MG. Characterizing the location of spinal and vertebral levels in the human cervical spinal cord. AJNR Am J Neuroradiol 2014.
  35. Fonov VS, Le Troter A, Taso M, De Leener B, Leveque G, Benhamou M, Sdika M, Benali H, Pradat PF, Collins DL, Callot V, Cohen-Adad J. Framework for integrated MRI average of the spinal cord white and gray matter: The MNI-Poly-AMU template. Neuroimage 2014;102P2:817-827.
  36. Cohen-Adad J, Martinez M, Delivet-Mongrain H, Rossignol S. Recovery of locomotion after partial spinal cord lesions in cats: assessment using behavioral, electrophysiological and imaging techniques Acta Neurobiol Exp (Wars) 2014;74(2):142-57.
  37. Ullmann E, Thong W, Pelletier Paquette JP, Cohen-Adad J. Automatic labeling of vertebral levels using a robust template-based approach. Int J Biomed Imaging 2014;Article ID 719520.
  38. El Mendili MM, Cohen-Adad J, Pelegrini-Issac M, Rossignol S, Morizot-Koutlidis R, Marchand-Pauvert V, Iglesias C, Sangari S, Katz R, Lehericy S, Benali H, Pradat PF. Multi-parametric spinal cord MRI as potential progression marker in amyotrophic lateral sclerosis. PLoS ONE* 2014;9(4):e95516
  39. De Leener B, Kadoury S, Cohen-Adad J. Robust, accurate and fast automatic segmentation of the spinal cord. NeuroImage 2014; 98, 528-536.
  40. Hendrix P, Griessenauer CJ, Cohen-Adad J, Rajasekaran S, Cauley KA, Shoja MM, Pezeshk P, Shane Tubbs R. Spinal diffusion tensor imaging: A comprehensive review with emphasis on spinal cord anatomy and clinical applications. Clin Anat 2015;28(1):88-95.
  41. Verma T, Cohen-Adad J. Effect of respiration on the B0 field in the human spinal cord at 3T Magn Reson Med 2014;72(6):1629-1636.
  42. El Mendili MM, Chen R, Tiret B, Pélégrini-Issac M, Cohen-Adad J, Lehéricy S, Pradat PF, Benali H. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0122224Validation of a semi-automatic spinal cord segmentation method. J Magn Reson Imaging 2014.
  43. Mezer AA, Yeatman J, Stikov N, Kay K, Cho N, Dougherty RF, Perry LM, Parvizi J, Hua LH, Butts-Pauly K, Wandell BA. Measuring within the Voxel: Brain Tissue Volume in Individual Subjects. Nature Medicine 2013; 19: 1667-1672
  44. Satpute A, Wager T, Cohen-Adad J, Bianciardi M, Choi J-K, Buhle J, Wald LL, Fedman Barret L. Identification of Discrete Functional Subregions of the Human Periaqueductal Gray. Proc Natl Acad Sci U S A 2013.
  45. Zhao W, Cohen-Adad J, Polimeni JR, Keil B, Guerin B, Setsompop K, Serano P, Mareyam A, Hoecht P, Wald LL. Nineteen-channel receive array and four-channel transmit array coil for cervical spinal cord imaging at 7T. Magn Reson Med 2014;72(1):291-300.
  46. Wheeler-Kingshott CAM, Stroman PW, Schwab JM, Bacon M, Bosma R, Brooks J, Cadotte DW, Carlstedt T, Ciccarelli O, Cohen-Adad J, Curt A, Evangelou N, Fehlings MG, Filippi M, Kelley BJ, Kollias S, MacKay A, Porro C, Smith S, Strittmatter SM, Summers P, Thompson AJ, Tracey I. The current state-of-the-art of spinal cord imaging - Applications. NeuroImage 2013.
  47. Setsompop K, Kimmlingen R, Eberlein E, Witzel T, Cohen-Adad J, McNab JA, Keil B, Tisdall MD, Hoecht P, Dietz P, Cauley SF, Tountcheva V, Matschl V, Lenz H, Bhat H, Heberlein K, Potthast A, Thein H, Van Horn JD, Toga AW, Schmitt F, Lehne D, Rosen BR, Wedeen VJ, Wald LL. Pushing the limits of in vivo diffusion MRI for the Human Connectome Project. NeuroImage 2013.
  48. McNab JA, Edlow BL, Witzel T, Huang SY, Bhat H, Heberlein K, Feiweier T, Liu K, Keil B, Cohen-Adad J, Tisdall MD, Folkerth RD, Kinney HC, Wald LL. The Human Connectome Project and beyond: Initial applications of 300 mT/m gradients. NeuroImage 2013; 80:234–245; PDF.
  49. Stroman P, Wheeler-Kingshott C, Bacon M, Schwab J, Bosma RL, Brooks JCW, Cadotte D, Ciccarelli O, Cohen-Adad J, Curt A, Evangelou N, Fehlings MG, Filippi M, Kelly B, Kollias S, MacKay AL, Porro CA, Smith S, Strittmatter SM, Summers P, Tracey I. The current state-of-the-art of spinal cord imaging: Methods. Neuroimage 2013.
  50. Cadotte DW, Cohen-Adad J, Fehlings MG. Visualizing Integrative Functioning in the Human Brainstem and Spinal Cord With Spinal fMRI. Clinical Neurosurgery 2013 Aug;60 Suppl 1:102-9.
  51. Cohen-Adad J. What can we learn from T2* maps of the cortex? Neuroimage 2013. http://dx.doi.org/10.1016/ j.neuroimage.2013.01.023
  52. Cohen-Adad J. High-Resolution DWI in Brain and Spinal Cord with syngo RESOLVE. Siemens MAGNETOM FLASH 2012.
  53. Cohen-Adad J, Mendili MM, Morizot-Koutlidis R, Lehéricy S, Meininger V, Blancho S, Rossignol S, Benali H, Pradat PF. Involvement of spinal sensory pathway in ALS and specificity of cord atrophy to lower motor neuron degeneration. Amyotroph Lateral Scler 2013 Jan;14(1):30-8.
  54. Bilgic B, Setsompop K, Cohen-Adad J, Yendiki A, Wald LL, Adalsteinsson E. Accelerated diffusion spectrum imaging with compressed sensing using adaptive dictionaries. Magn Reson Med. 2012 Dec;68(6):1747-54
  55. Cheng HLM, Stikov N, Ghugre N, Wright GA. Practical Clinical Applications of MR relaxometry. Journal of Magnetic Resonance Imaging 2012; 36(4): 805-824 (2012)
  56. Stikov N. Improving the Accuracy of Cross-relaxation Imaging. International Journal of Imaging Systems and Technology 2012; 22(1): 67-72
  57. Cohen-Adad J, Zhao W, Keil B, Ratai E-M, Lawson R, Dheel C, Wald LL, Rosen BR, Cudkowicz M, Atassi N. 7T MRI of the spinal cord can detect corticospinal tract abnormality in ALS. Muscle Nerve. 2012 Nov 13. doi: 10.1002/mus.23720.
  58. Cohen-Adad J, Zhao W, Wald LL, Oaklander AL. 7T MRI of spinal cord injury. Neurology 2012 Nov 27;79(22):2217
  59. Xie G, Piche M, Khoshejad M, Perlbarg V, Chen J-I, Hoge RD, Benali H, Rossignol S, Rainville P, Cohen-Adad J. Reduction of physiological noise with independent component analysis improves the detection of nociceptive responses with fMRI of the human spinal cord. NeuroImage 2012 Oct 15;63(1):245-52.
  60. Setsompop K, Cohen-Adad J, Gagoski BA, Raij T, Yendiki A, Keil B, Wedeen VJ, Wald LL. Improving diffusion MRI using simultaneous multi-slice Echo Planar Imaging. Neuroimage 2012 Oct 15;63(1):569-80.
  61. Bilgic B, Setsompop K, Cohen-Adad J, Wedeen VJ, Wald LL, Adalsteinsson E. Accelerated Diffusion Spectrum Imaging with Compressed Sensing using Adaptive Dictionaries. Med Image Comput Comput Assist Interv 2012.
  62. Cohen-Adad J, Polimeni JR, Helmer KG, Benner T, McNab JA, Wald LL, Rosen B, Mainero C. T2* mapping and B0 orientation-dependence at 7T reveal cyto- and myeloarchitecture organization of the human cortex. Neuroimage 2012;DOI: 10.1016/j.neuroimage.2012.01.053. PDF
  63. Miller KL, Tijssen RHN, Stikov N, Okell T. Steady-state MRI: Methods for Neuroimaging. Imaging in Medicine 2011; 3(1): 93-105.
  64. Stikov N, Perry LM, Ryklevskaya E, Mezer A, Wandell BA, Pauly JM, Dougherty RF. Bound Pool Fractions Complement Diffusion Measures in Characterizing White Matter Micro and Macrostructure. Neuroimage 2011; 54(2): 1112-1121.
  65. Sharman M, Cohen-Adad J, Descoteaux M, Messé A, Benali H, Lehericy S. Impact of outliers in diffusion tensor and Q-Ball imaging – clinical implications and correction strategies. J Magn Reson Imaging 2011;33(6):1491-1502.
  66. Nielsen AS, Kinkel RP, Tinelli E, Benner T, Cohen-Adad J, Mainero C. Focal cortical lesion detection in multiple sclerosis: 3 tesla DIR versus 7 tesla FLASH-T2. J Magn Reson Imaging 2011. DOI: 10.1002/jmri.22847.PDF
  67. Cohen-Adad J, Leblond H, Delivet-Mongrain H, Martinez M, Benali H, Rossignol S. Wallerian degeneration after spinal cord lesions in cats detected with diffusion tensor imaging. Neuroimage 2011; 57(3):1068-1076.
  68. Lundell H, Barthelemy D, Biering-Sorensen F, Cohen-Adad J, Nielsen JB, Dyrby TB. Fast diffusion tensor imaging and tractography of the whole cervical spinal cord using point spread function corrected echo planar imaging. Magn Reson Med 2012;10.1002/mrm.24235.PDF
  69. Cohen-Adad J, Benner T, Greve DN, Kinkel RP, Radding A, Fischl B, Rosen BR, Mainero C. Evidence of distributed subpial T2* signal changes in multiple sclerosis at 7T: a surface-based analysis. Neuroimage 2011; 57(1):55-62.PDF
  70. Cohen-Adad J, Mareyam A, Polimeni J, Wald LL. Optimized 32-Channel RF coil for brain, brainstem and cervical spinal cord at 3T. Magn Reson Med 2011;66(4):1198-1208. PDF
  71. Cohen-Adad J, Descoteaux M, Wald LL. Assessing the quality of HARDI data for Q-Ball reconstruction using regular bootstrap. J Magn Reson Imaging 2011;33(5):1194-1208. PDF
  72. Cohen-Adad J, El-Mendili MM, Pradat PF, Blancho S, Lehericy S, Rossignol S, Benali H. Demyelination in the injured human spinal cord detected with diffusion and magnetization transfer imaging. Neuroimage 2011;55(3):1024-1033.
  73. Barral JK, Gudmundson E, Stikov N, Etezadi-Amoli M, Stoica P, Nishimura DG. A Robust Methodology for T1 Mapping. Magnetic Resonance in Medicine 2010; 64(4): 1057-1067.
  74. Brieu N, Beaumont E, Dubeau S, Cohen-Adad J, Lesage F. Characterization of the hemodynamic response in vivo rat lumbar spinal cord by intrinsic optical imaging and laser speckle microscopy. J Neurosci Methods 2010;30:191(2):151-157.PDF
  75. Cohen-Adad J, Gauthier CJ, Brooks JCW, Slessarev M, Han J, Fisher JA, Rossignol S, Hoge RD. BOLD signal responses to controlled hypercapnia in human spinal cord. Neuroimage 2010;50(3):1074-1084.PDF
  76. Onu, M., Cohen-Adad, J., Tomanek, B., Kornelsen, J., Lawrence, J., Gervai, P., Frankenstein, U.N., 2009. Human Cervical Spinal Cord Funiculi – Investigation with Magnetic Resonance Diffusion Tensor Imaging. J Magn Reson Imaging, 2010;31(4):829-837.PDF
  77. Cohen-Adad J, Hoge RD, Leblond H, Xie G, Beaudoin G, Song AW, Krueger G, Doyon J, Benali H, Rossignol S. Investigations on spinal cord fMRI of cats under ketamine. Neuroimage 2009;44(2):328-339.PDF
  78. Piché M, Cohen-Adad J, Nejad MK, Perlbarg V, Xie G, Beaudoin G, Benali H, Rainville P. Characterization of cardiac-related noise in fMRI of the cervical spinal cord. Magn Reson Imaging 2009;27(3):300-310. PDF
  79. Cohen-Adad, J., Descoteaux, M., Rossignol, S., Hoge, R.D., Deriche, R., Benali, H. Detection of multiple pathways in the spinal cord using q-ball imaging. Neuroimage, 42, 739-749 (2008). PDF
  80. Cohen-Adad, J., Benali, H., Barrière, G., Leblond, H., Hoge, R.D., Rossignol, S. Development of clinical diffusion tensor MRI of the spinal cord in a context of spinal cord injury. [in French]. IRBM, 29, 255-260 (2008). PDF
  81. Cohen-Adad, J., Benali, H., Hoge, R.D., Rossignol, S. In vivo DTI of the healthy and injured cat spinal cord at high spatial and angular resolution. Neuroimage 40, 685-697 (2008). PDF
  82. Cohen-Adad, J., Chapuisat, S., Doyon, J., Rossignol, S., Lina, J.M., Benali, H., Lesage, F. Activation detection in diffuse optical imaging by means of the general linear model. Med Image Anal 11, 616-629 (2007). PDF

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