Table of Contents
Events & Workshops
Below are the workshops/hackathons organized by the Lab:
MRI teaching material
Videos:
Slides:
Software:
- Gadgetron: open source framework for medical image reconstruction
- MRI Unbound: open source software for image recon and pulse seq design
Pulse sequences
- Open source pulse sequence programming (Matlab): http://pulseq.github.io/
RF Simulation
- Jülich Extensible MRI Simulator (JEMRIS). Provides an MRI sequence development and simulation environment.
Histology
- ilastik is a simple, user-friendly tool for interactive image classification, segmentation and analysis. It is built as a modular software framework, which currently has workflows for automated (supervised) pixel- and object-level classification, automated and semi-automated object tracking, semi-automated segmentation and object counting without detection.
- Trainable Weka Segmentation: A Fiji plugin that combines a collection of machine learning algorithms with a set of selected image features to produce pixel-based segmentations using Weka. Provides a framework to use and compare any available classifier to perform image segmentation based on pixel classification, bridging machine learning and image processing. Has GUI support.
- CDeep3M: Plug-and-Play cloud based deep learning for image segmentation of light, electron and X-ray microscopy
