Table of Contents


List of software created at NeuroPoly or at collaborative institutions. These software are open source and freely available.

  • Spinal Cord Toolbox: comprehensive and open-source library of analysis tools for multi-parametric MRI of the spinal cord.
  • AxonSeg: Automatic segmentation of axon and myelin from microscopy data. Written in Matlab.
  • qMRLab: Software for Data Simulation, Analysis, and Visualization of Quantitative Magnetic Resonance Imaging (Magnetization Transfer, Diffusion etc.) data.
  • AxonPacking: Mingasson, T., Duval, T., Stikov, N., Cohen-Adad, J., 2017. AxonPacking: An Open-Source Software to Simulate Arrangements of Axons in White Matter. Front. Neuroinform. 11, 5.


Config files

Config file for various software